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Structure Learning and Gene Regulatory Networks
- 2
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Lise Pomiès, Céline Brouard, Harold Duruflé, Élise Maigné, Clément
Carré, Louise Gody, Fulya Trösser, George Katsirelos, Brigitte Mangin,
Nicolas B Langlade, and Simon de Givry
Gene regulatory network inference methodology for genomic and
transcriptomic data acquired in genetically related heterozygote
individuals
Bioinformatics, 38(17):4127–4134, 07 2022
- 3
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Fulya Trösser, Simon de Givry, and George Katsirelos
Structured Set Variable Domains in Bayesian Network Structure
Learning
In Proc. of CP-22, volume 235, pages 37:1–37:9, Haifa,
Israel, 2022
- 4
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Fulya Trösser, Simon de Givry, and George Katsirelos
Improved acyclicity reasoning for bayesian network structure learning
with constraint programming
In Proc. of IJCAI-21, Montreal, Canada, 2021
- 5
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Gody, Louise, Duruflé, Harold, Blanchet, Nicolas, Carré, Clément,
Legrand, Ludovic, Mayjonade, Baptiste, Muños, Stéphane, Pomiès,
Lise, de Givry, Simon, Langlade, Nicolas B., and Mangin, Brigitte
Transcriptomic data of leaves from eight sunflower lines and their
sixteen hybrids under water deficit
OCL, 27:48, 2020
- 6
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Penouilh-Suzette, Charlotte, Pomiès, Lise, Duruflé, Harold,
Blanchet, Nicolas, Bonnafous, Fanny, Dinis, Romain, Brouard,
Céline, Gody, Louise, Grassa, Christopher, Heudelot, Xavier,
Laporte, Marion, Larroque, Marion, Marage, Gwenola, Mayjonade,
Baptiste, Mangin, Brigitte, de Givry, Simon, and Langlade, Nicolas B
Rna expression dataset of 384 sunflower hybrids in field condition
OCL, 27:36, 2020
- 7
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Lise Pomiès, Louise Gody, Charlottte Penouilh-Suzette, Nicolas Langlade,
Brigitte Mangin, and Simon de Givry
Building artificial genetical genomic datasets to optimize the choice
of gene regulatory network inference methods
In Poster at ECCB, Athens, Greece, 2018
- 8
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Lise Pomiès, Louise Gody, Charlottte Penouilh-Suzette, Nicolas Langlade,
Brigitte Mangin, and Simon de Givry
Building artificial genetical genomic datasets to optimize the choice
of gene regulatory network inference methods
In Proc. of JOBIM, pages 338–341, Marseilles, France, 2018
https://miat.inrae.fr/degivry/Pomies18aa.pdf (poster)
- 9
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David Allouche, Christine Cierco-Ayrolles, Simon de Givry, G Guillermin,
Brigitte Mangin, Thomas Schiex, Jimmy Vandel, and Matthieu Vignes
Gene Network Inference, chapter A Panel of Learning Methods for
the Reconstruction of Gene Regulatory Networks in a Systems Genetics Contex
Springer, 2014
- 10
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J Vandel, B Mangin, and S de Givry
New Local Move Operators for Bayesian Network Structure Learning
In Proc. of PGM-12, Granada, Spain, 2012
- 11
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J Vandel, B Mangin, and S de Givry
New Local Move Operators for Learning the Structure of Bayesian
Networks
In ECAI-12 workhop on algorithmic issues for inference in
graphical models, Montpellier, France, 2012
- 12
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Matthieu Vignes, Jimmy Vandel, David Allouche, Nidal Ramadan-Alban, Christine
Cierco-Ayrolles, Thomas Schiex, Brigitte Mangin, and Simon de Givry
Gene regulatory network reconstruction using bayesian networks, the
dantzig selector, the lasso and their meta-analysis
PLoS ONE, 6(12), 2011
- 13
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J Vandel and S de Givry
A New Local Move Operator for Reconstructing Gene Regulatory
networks
In CP-11 workshop on Constraint Based Methods for
Bioinformatics, pages 67–72, Perugia, Italy, 2011
- 14
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J Vandel, B Mangin, M Vignes, and S de Givry
Extended bayesian scores for reconstructing gene regulatory networks
In ECCS-10 workshop on graphical models for reasoning on
biological systems: computational challenges, Lisbon, Portugal, 2010
-
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In French:
- 16
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Simon de Givry, George Katsirelos, and Fulya Ural
Contrainte pondérée d'acyclicité pour l'apprentissage de réseaux
bayésiens
In Journées Francophones sur les Réseaux Bayésiens
et les Modèles Graphiques Probabilistes, Toulouse, France, 2018
- 17
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Jimmy Vandel, Brigitte Mangin, Matthieu Vignes, Damien Leroux, Olivier Loudet,
Marie-Laure Martin-Magniette, and Simon de Givry
Inférence de réseaux de régulation de gènes au travers de
scores étendus dans les réseaux bayésiens
Revue d'Intelligence Artificielle, 26(6):679–708, 2012
- 18
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J. Vandel, S. de Givry, B. Mangin, and M. Vignes
Reconstruction de réseau de régulation de gène à l'aide de
données génomiques et de données génétiques
In Proc. of CAP-10, 2010
- 19
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J. Vandel and S. de Givry
Inférence de réseaux de régulation de gènes à partir de
données d'expression et de polymorphisme
In JOBIM-09 workshop sur Modèles graphiques probabilistes pour
l'intégration de données hétérogènes et la découverte de modèles
causaux en biologie, Nantes, France, 2009
-
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Agronomy and Operations Research
- 21
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Sara Maqrot, Simon De Givry, Marc Tchamitchian, and Gauthier Quesnel
Learning parameters of the wedelin heuristic with application to crew
and bus driver scheduling
https://hal.inrae.fr/hal-03170397, 2021
- 22
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Sara Maqrot, Simon de Givry, Gauthier Quesnel, and Marc Tchamitchian
Improving Wedelin's Heuristic with Sensitivity Analysis for Set
Partitioning
In 23rd International Symposium on Mathematical Programming
(ISMP-18), Bordeaux, France, 2018
- 23
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Sara Maqrot, Simon de Givry, Marc Tchamitchian, and Gauthier Quesnel
Improving Wedelin's Heuristic with Sensitivity Analysis
In Proc. of ROADEF-18, page 2p, Lorient, France, 2018
- 24
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Sara Maqrot, Simon de Givry, Gauthier Quesnel, and Marc Tchamitchian
A Mixed Integer Programming Reformulation of the Mixed
Fruit-Vegetable Crop Allocation Problem
In 30th International Conference on Industrial, Engineering, and
Other Applications of Applied Intelligent Systems (IEA/AIE), page 12 pages,
Arras, France, June 2017
- 25
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Sara Maqrot, Simon de Givry, Gauthier Quesnel, and Marc Tchamitchian
Mixed Fruit-Vegetable Crop Allocation Problem using MIP
In Proc. of ROADEF-17, page 2p, Metz, France, 2017
- 26
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Sara Maqrot, Simon de Givry, Gauthier Quesnel, and Marc Tchamitchian
Designing mixed fruit-vegetable cropping systems by integer quadratic
programming
In 8th International Congress on Environmental Modelling and
Software (iEMSs), page 9 pages, Toulouse, France, July 2016
- 27
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Sara Maqrot, Simon de Givry, Gauthier Quesnel, and Marc Tchamitchian
Designing mixed fruit-vegetable cropping systems by integer quadratic
programming
In ISHS International Symposium on models for plant growth,
environment control and farming management in protected cultivation
(HORTIMODEL), page 8 pages, Avignon, France, September 2016
- 28
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Mahuna Akplogan, Simon de Givry, Jean-Philippe Métivier, Gauthier Quesnel,
Alexandre Joannon, and Frédérick Garcia
Solving the crop allocation problem using hard and soft constraints
RAIRO - Operations Research, 47:151–172, 2013
- 29
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M Akplogan, J Dury, S de Givry, G Quesnel, A Joannon, A Reynaud, J-E Bergez,
and F Garcia
A weighted csp approach for solving spatio-temporal planning problem
in farming systems
In Proc. of the Soft'2011 workshop, pages 1–15, Perugia,
Italy, 2011
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In French:
- 31
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Sara Maqrot, Simon de Givry, Marc Tchamitchian, and Gauthier Quesnel
Conception de systèmes de verger-maraîcher à
l'aide de la programmation mathématique
Revue Ouverte d'Intelligence Artificielle, 2(1):157–188, 2021
- 32
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M Akplogan, J Dury, S de Givry, G Quesnel, A Joannon, and F Garcia
Résolution du problème d'allocation de culture par satisfaction
de contraintes pondérées
In Proc. of JFPC-12, pages 5–14, Toulouse, France, 2012
-
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Bioinformatics
- 34
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Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe,
and Thomas Schiex
Guaranteed diversity and optimality in cost function network based
computational protein design methods
Algorithms, 14(6):168, 2021
- 35
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François Beuvin, Simon de Givry, Thomas Schiex, Sébastien Verel, and
David Simoncini
Iterated local search with partition crossover for computational
protein design
Proteins: Structure, Function, and Bioinformatics, 2021
- 36
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David Allouche, Sophie Barbe, Simon de Givry, George Katsirelos, Yahia Lebbah,
Samir Loudni, Abdelkader Ouali, Thomas Schiex, David Simoncini, and Matthias
Zytnicki
Operations Research and Simulation in Healthcare, chapter Cost
Function Networks to Solve Large Computational Protein Design Problems
Springer, 2021
- 37
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Clément Viricel, Simon de Givry, Thomas Schiex, and Sophie Barbe
Cost function network-based design of protein-protein interactions:
predicting changes in binding affinity
Bioinformatics, 34(15):2581–2589, 2018
- 38
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D. Simoncini, D. Allouche, S. de Givry, C. Delmas, S. Barbe, and T. Schiex
Guaranteed discrete energy optimization on large protein design
problems
Journal of Chemical Theory and Computation, 11(12):5980–5989,
2015
- 39
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David Allouche, Clément Viricel, Seydou Traoré, David Simoncini, Simon
de Givry, George Katsirelos, Isabelle André, Thomas Schiex, and Sophie
Barbe
Computational enzyme design through deterministic optimization and
counting
In 3DSIG: Structural Bioinformatics and Computational
Biophysics, page 26, Dublin, Ireland, July 2015
- 40
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Clément Viricel, David Simoncini, David Allouche, Simon de Givry, Sophie
Barbe, and Thomas Schiex
Approximate counting with deterministic guarantees for affinity
computation
In Proc. of MCO, pages 165–, Metz, France, May 2015
- 41
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N Briot, A Chateau, R Coletta, S de Givry, P Leleux, and T Schiex
An integer linear programming approach for genome scaffolding
In CP-14 workshop on Constraint-Based Methods for
Bioinformatics, Lyon, France, 2014
- 42
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JM Elsen, S de Givry, G Katsirelos, and F Shumbusho
Optimizing the reference population in a genomic selection design
In CP-13 workshop on Constraint Based Methods for
Bioinformatics, pages 37–46, Uppsala, Sweden, 2013
- 43
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Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George
Katsirelos, Thomas Schiex, and Sophie Barbe
A new framework for computational protein design through cost
function network optimization
Bioinformatics, 29(17):2129–2136, 2013
- 44
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B. Servin, S. de Givry, and T. Faraut
Statistical confidence measures for genome maps: application to the
validation of genome assemblies
Bioinformatics, 26(24):3035–3042, 2010
- 45
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A. Favier, J-M. Elsen, S. de Givry, and A. Legarra
Optimal haplotype reconstruction in half-sib families
In ICLP-10 workshop on Constraint Based Methods for
Bioinformatics, Edinburgh, UK, 2010
- 46
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A. Favier, J-M. Elsen, S. de Givry, and A. Legarra
Exact Haplotype Reconstruction in Half-Sib Families with Dense
Marker Maps
In 9th World Congress on Genetics Applied to Livestock
Production (WCGALP-10), Leipzig, Germany, 2010
- 47
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B Servin, S de Givry, and Faraut T
Modelling radiation hybrid maps uncertainty and application to the
validation of whole genome assemblies
In 9th World Congress on Genetics Applied to Livestock
Production (WCGALP-10), Leipzig, Germany, 2010
- 48
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T Faraut, S de Givry, C Hitte, Y Lahbib-Mansais, M Morisson, D Milan, T Schiex,
B Servin, A Vignal, F Galibert, and M Yerle
Contribution of Radiation Hybrids to Genome Mapping in Domestic
Animals
Cytogenetic and Genome Research, 126:21–33, 2009
- 49
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D Allouche, S de Givry, M Sanchez, and T Schiex
TagSNP selection using Weighted CSP and Russian Doll Search with
Tree Decomposition
In CP-09 workshop on Constraint Based Methods for
Bioinformatics, Lisbon, Portugal, 2009
- 50
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M. Sánchez, S. de Givry, and T. Schiex
Mendelian error detection in complex pedigrees using weighted
constraint satisfaction techniques
Constraints, 13(1):130–154, 2008
- 51
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Elisa Marques, Simon De Givry, Paul Stothard, Brenda Murdoch, Zhiquan Wang,
James Womack, and Stephen Moore
A high resolution radiation hybrid map of bovine chromosome 14
identifies scaffold rearrangement in the latest bovine assembly
BMC Genomics, 8:254, 2007
- 52
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
Bioinformatics, 23(2):50–56, 2007
- 53
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
In Proc. of ECCB-06, page 7p., Eilat, Israel, 2007
- 54
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P. Thébault, S. de Givry, T. Schiex, and C. Gaspin
Searching RNA motifs and their intermolecular contacts with
constraint networks
Bioinformatics, 22(17):2074–2080, 2006
- 55
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S. de Givry, Z. Vitezica, I. Palhiere, and T. Schiex
Mendelsoft: Mendelian error detection in complex pedigree using
weighted constraint satisfaction techniques
In 8th World Congress on Genetics Applied to Livestock
Production, page 2p., Belo Horizonte, Brazil, 2006
- 56
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S. de Givry, I. Palhiere, Z. Vitezica, and T. Schiex
Mendelian error detection in complex pedigree using weighted
constraint satisfaction techniques
In ICLP-05 workshop on Constraint Based Methods for
Bioinformatics, page 9p., Sitges, Spain, 2005
- 57
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Patricia Thébault, Simon de Givry, Thomas Schiex, and Christine Gaspin
Combining constraint processing and pattern matching to describe and
locate structured motifs in genomic sequences
In Fifth IJCAI-05 Workshop on Modelling and Solving Problems
with Constraints, page 8p., Edindurgh, Scotland, 2005
- 58
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S. de Givry, M. Bouchez, P. Chabrier, D. Milan, and T. Schiex
CARTHAGENE: multipopulation integrated genetic and radiated hybrid
mapping
Bioinformatics, 21(8):1703–1704, 2005
- 59
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S. de Givry, T. Faraut, and T. Schiex
Experiments in an algorithmic approach to comparative radiation
hybrid mapping
Poster at the International Multidisciplinary Meeting on
Post-Genomics, IPG'04, Lyon, France, October 2004
-
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In French:
- 61
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D. Allouche, S. de Givry, and T. Schiex
Sélection de tagSNP : une approche PLNE
In Proc. of ROADEF-10, Toulouse, France, 2010
- 62
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B. Servin, S. de Givry, and T. Faraut
Modélisation de l'incertitude des cartes comparées et application
à l'étude des assemblages génomiques
In Séminaire Génétique Animale, Lacanau, France, 2008
- 63
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T. Faraut, S. de Givry, P. Chabrier, T. Derrien, F. Galibert, C. Hitte, and
T. Schiex
A comparative genome approach to marker ordering
In Proc. of JOBIM-06, page 11p., Bordeaux, France, 2006
- 64
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P. Chabrier, C. Gaspin, S. de Givry, and T. Schiex
Application des techniques du voyageur de commerce à la production
de cartes génétiques
In Proc. of ROADEF-03, pages 74–76, Avignon, France, 2003
-
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Valued Constraint Satisfaction Problems
- 66
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Samuel Buchet, David Allouche, Simon de Givry, and Thomas Schiex
Bi-objective discrete graphical model optimization
In Proc. of CP-AI-OR'2024, pages 136–152, Uppsala, Sweden,
2024
- 67
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Pierre Montalbano, David Allouche, Simon de Givry, George Katsirelos, and
Tomáš Werner
Virtual pairwise consistency in cost function networks
In Proc. of CP-AI-OR'2023, Nice, France, 2023
- 68
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Tomáš Dlask, Tomáš Werner, and Simon de Givry
Super-Reparametrizations of Weighted CSPs: Properties and
Optimization Perspective
Constraints, 28:277–319, 2023
- 69
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Samuel Buchet, Marianne Defresne, Simon de Givry, Manon Ruffini, and Thomas
Schiex
Bilevel optimization and its bicriteria approximation in
computational protein design
In Proc. of ROADEF-23, page 2p, Rennes, France, 2023
https://miat.inrae.fr/degivry/Givry23b.pdf
- 70
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ToulBar2 Team
toulbar2: an exact cost function network solver
In Proc. of ROADEF-23, page 2p, Rennes, France, 2023
https://miat.inrae.fr/degivry/Givry23d.pdf
- 71
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Abdelkader Beldjilali, Pierre Montalbano, David Allouche, George Katsirelos,
and Simon de Givry
Parallel Hybrid Best-First Search
In Proc. of CP-22, volume 235, pages 7:1–7:10, Haifa, Israel,
2022
Slides of the presentation
https://miat.inrae.fr/degivry/Beldjilali22Slides.pdf and supplementary
materials https://miat.inrae.fr/degivry/Beldjilali22Supp.pdf
- 72
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Pierre Montalbano, Simon de Givry, and George Katsirelos
Multiple-choice knapsack constraint in graphical models
In Proc. of CP-AI-OR'2022, Los Angeles, CA, 2022
- 73
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Tomáš Dlask, Tomáš Werner, and Simon de Givry
Bounds on weighted csps using constraint propagation and
super-reparametrizations
In Proc. of CP-21, Montpellier, France, 2021
- 74
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Céline Brouard, Simon de Givry, and Thomas Schiex
Pushing data in cp models using graphical model learning and solving
In Proc. of CP-20, pages 881–827, Louvain-la-neuve, Belgium,
2020
- 75
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Fulya Trösser, Simon de Givry, and George Katsirelos
Relaxation-aware heuristics for exact optimization in graphical
models
In Proc. of CP-AI-OR'2020, pages 475–491, Vienna, Austria,
2020
- 76
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Fulya Trösser, Simon de Givry, and George Katsirelos
Relaxation-aware heuristics for exact optimization in graphical
models - additional figures
Supplementary materials at CP-AI-OR'2020, 2020
- 77
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Helmut Simonis, Simon de Givry, Thomas Schiex, and Andreas Schutt
Modelling the conference paper assignment problem
In Proc. of the 19th workshop on Constraint Modelling and
Reformulation (ModRef-20), page 17, Louvain-la-neuve, Belgium (virtual
conference), 2020
- 78
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Martin C. Cooper, Simon de Givry, and Thomas Schiex
Valued Constraint Satisfaction Problems, pages 185–207
Springer International Publishing, 2020
- 79
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Martin C. Cooper, Simon de Givry, and Thomas Schiex
Graphical models: Queries, complexity, algorithms (tutorial)
In 37th International Symposium on Theoretical Aspects of
Computer Science (STACS-20), volume 154 of LIPIcs, pages 4:1–4:22,
Montpellier, France, 2020
- 80
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Abdelkader Ouali, David Allouche, Simon de Givry, Samir Loudni, Yahia Lebbah,
Lakhdar Loukil, and Patrice Boizumault
Variable neighborhood search for graphical model energy minimization
Artificial Intelligence, 278(103194):22p., 2020
- 81
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Nathalie Peyrard, Marie-Josée Cros, Simon de Givry, Alain Franc,
Stéphane Robin, Régis Sabbadin, Thomas Schiex, and Matthieu
Vignes
Exact or approximate inference in graphical models: why the choice is
dictated by the treewidth, and how variable elimination can be exploited
Australian & New Zealand Journal of Statistics, 61(2):89–133,
2019
- 82
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Abdelkader Beldjilali, David Allouche, and Simon de Givry
Parallel Hybrid Best-First Search
Abstract and poster at CP-19, 2019
https://miat.inrae.fr/degivry/Beldjilali19b.pdf (poster)
- 83
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M. Ruffini, J. Vucinic, S. de Givry, G. Katsirelos, S. Barbe, and T. Schiex
Guaranteed diversity & quality for the weighted csp
In Proc. of ICTAI-19, pages 18–25, Portland, OR, USA, 2019
- 84
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David Allouche, S de Givry, George Katsirelos, Abdelkader Ouali, Thomas Schiex,
and Matthias Zytnicki
Recent algorithmic advances for combinatorial optimization in
graphical models
In 23rd International Symposium on Mathematical Programming
(ISMP-18), Bordeaux, France, 2018
https://miat.inrae.fr/degivry/GivryISMP2018.pdf
- 85
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S de Givry and G Katsirelos
Clique Cuts in Weighted Constraint Satisfaction
In Proc. of CP-17, pages 97–113, Melbourne, Australia, 2017
- 86
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Abdelkader Ouali, David Allouche, Simon de Givry, Samir Loudni, Yahia Lebbah,
Francisco Eckhardt, and Lakhdar Loukil
Iterative Decomposition Guided Variable Neighborhood Search for
Graphical Model Energy Minimization
In Proc. of UAI-17, pages 550–559, Sydney, Australia, 2017
- 87
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Hiep Nguyen, Christian Bessiere, Simon de Givry, and Thomas Schiex
Triangle-based Consistencies for Cost Function Networks
Constraints, 22(2):230–264, 2017
- 88
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David Allouche, Christian Bessière, Patrice Boizumault, Simon de Givry,
Patricia Gutierrez, Jimmy H.M. Lee, Ka Lun Leung, Samir Loudni, Jean-Philippe
Métivier, Thomas Schiex, and Yi Wu
Tractability-preserving transformations of global cost functions
Artificial Intelligence, 238:166–189, 2016
- 89
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B Hurley, B O'Sullivan, D Allouche, G Katsirelos, T Schiex, M Zytnicki, and
S de Givry
Multi-Language Evaluation of Exact Solvers in Graphical Model
Discrete Optimization
Constraints, 21(3):413–434, 2016
Presentation at CPAIOR'16, Banff, Canada,
https://miat.inrae.fr/degivry/cpaior16sdg.pdf
- 90
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B Hurley, B O'Sullivan, D Allouche, G Katsirelos, T Schiex, M Zytnicki, and
S de Givry
Multi-Language Evaluation of Exact Solvers in Graphical Model
Discrete Optimization (Summary)
In Proc. of CP-AI-OR'2016, page 1 page, Banff, Canada, 2016
- 91
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D Allouche, S de Givry, G Katsirelos, T Schiex, and M Zytnicki
Anytime Hybrid Best-First Search with Tree Decomposition for
Weighted CSP
In Proc. of CP-15, pages 12–28, Cork, Ireland, 2015
- 92
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Hiep Nguyen, Simon de Givry, Thomas Schiex, and Christian Bessiere
Maintaining virtual arc consistency dynamically during search
In Proc. of ICTAI-14, pages 8–15, Limassol, Cyprus, 2014
- 93
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S de Givry, J.H.M. Lee, K.L. Leung, and Y.W. Shum
Solving a Judge Assignment Problem Using Conjunctions of Global Cost
Functions
In Proc. of CP-14, pages 797–812, Lyon, France, 2014
- 94
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S de Givry, B Hurley, D Allouche, G Katsirelos, B O'Sullivan, and T Schiex
An experimental evaluation of cp/ai/or solvers for optimization in
graphical models
In Proc. of ROADEF-14, page 1p, Bordeaux, France, 2014
- 95
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David Allouche, Jessica Davies, Simon de Givry, George Katsirelos, Thomas
Schiex, Seydou Traoré, Isabelle André, Sophie Barbe, Steve Prestwich,
and Barry O'Sullivan
Computational protein design as an optimization problem
Artificial Intelligence, 212:59–79, 2014
- 96
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B Hurley, S de Givry, T Schiex, D Allouche, and G Katsirelos
Uai inference competition 2014 mpe submissions: Proteus and robin
Invited talk at UAI 2014, 2014
- 97
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S de Givry, S Prestwich, and B O'Sullivan
Dead-End Elimination for Weighted CSP
In Proc. of CP-13, pages 263–272, Uppsala, Sweden, 2013
- 98
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François Fages, Simon de Givry, and Christine Solnon, editors
Preface, volume 47:2, 2013
- 99
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D Allouche, S de Givry, and T Schiex
Max-sat evaluation 2013: Toulbar2 to solve weighted partial max-sat
Technical report, INRA, 2013
- 100
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Simon de Givry, Lars Kotthoff, Helmut Simonis, and Barry O'Sullivan
Prototype of incentive policy mechanism
Fp7-epolicy deliverable wp5.2, University College Cork, 2013
- 101
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D Allouche, S Traoré, I André, S de Givry, G Katsirelos, S Barbe, and
T Schiex
Computational protein design as a cost function network optimization
problem
In Proc. of CP-12, Quebec City, Canada, 2012
- 102
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D Allouche, A Favier, S de Givry, T Schiex, M Zytnicki, M Fontaine,
JP Métivier, M Sanchez, and KL Leung
Combining exact WCSP techniques and VNS search for solving MPE
Invited talk at UAI 2012, 2012
- 103
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D Allouche, C Bessiere, P Boizumault, S de Givry, P Gutierrez, S Loudni,
JP Métivier, and T Schiex
Decomposing global cost functions
In Proc. of AAAI-12, Toronto, Canada, 2012
https://miat.inrae.fr/degivry/Ficolofo2012poster.pdf (poster)
- 104
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D Allouche, C Bessiere, P Boizumault, S de Givry, P Gutierrez, S Loudni,
JP Métivier, and T Schiex
Decomposing global cost functions
In Proc. of the Soft'2011 workshop, pages 16–30, Perugia,
Italy, 2011
- 105
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A Favier, S de Givry, A Legarra, and T Schiex
Pairwise decomposition for combinatorial optimization in graphical
models
In Proc. of IJCAI-11, Barcelona, Spain, 2011
Video demonstration at https://miat.inrae.fr/degivry/Favier11.mov
- 106
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A. Favier, S. de Givry, and P. Jégou
Solution counting for CSP and SAT with large tree-width
Control Systems and Computers, 2:4–13, 2011
- 107
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D. Allouche, S. de Givry, and T. Schiex
Towards parallel non serial dynamic programming for solving hard
weighted csp
In Proc. of CP-10, St Andrews, Scotland, 2010
- 108
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D. Allouche, S. de Givry, and T. Schiex
Toulbar2, an open source exact cost function network solver
Technical report, INRA, 2010
Contributors: M. Sanchez (SP), S. Bouveret (F), H. Fargier (F), F
Heras (SP), P. Jégou (F), J. Larrosa (SP), K. L. Leung (CN), S. N'diaye (F),
E. Rollon (SP), C. Terrioux (F), G. Verfaillie (F), M. Zytnicki
- 109
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, M. Zytnicki, and T. Werner
Soft arc consistency revisited
Artificial Intelligence, 174(7–8):449–478, 2010
- 110
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A. Favier, S. de Givry, and P. Jégou
Exploiting problem structure for solution counting
In Proc. of CP-09, pages 335–343, Lisbon, Portugal, 2009
- 111
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M. Zytnicki, C. Gaspin, S. de Givry, and T. Schiex
Bounds Arc Consistency for Weighted CSPs
Journal of Artificial Intelligence Research, 35:593–621, 2009
- 112
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R. Marinescu, R. Dechter, S. de Givry, and T. Schiex
Combinatorial optimization for graphical models
IJCAI-09 tutorial, July 2009
https://miat.inrae.fr/degivry/tutorial_optimization_ijcai09.ppt
- 113
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M Sanchez, D Allouche, S de Givry, and T Schiex
Russian doll search with tree decomposition
In Proc. of IJCAI-09, Pasadena (CA), USA, 2009
https://miat.inrae.fr/degivry/rdsbtd_ijcai09_sdg.ppt
- 114
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M. Sanchez, D. Allouche, S. de Givry, and T. Schiex
Russian doll search with tree decomposition
In Workshop on Preferences and Soft Constraints,
Sydney,Australia, 2008
- 115
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M. Sanchez, S. Bouveret, S. de Givry, F. Heras, P. Jégou, J. Larrosa,
S. Ndiaye, E. Rollon, T. Schiex, C. Terrioux, G. Verfaillie, and M. Zytnicki
Max-csp competition 2008: toulbar2 solver description
In Proceedings of the Third International CSP Solver
Competition, 2008
- 116
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, and M. Zytnicki
Virtual arc consistency for weighted csp
In Proc. of AAAI-08, Chicago, IL, 2008
- 117
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S. Bouveret, S. de Givry, F. Heras, J. Larrosa, E. Rollon, M. Sanchez,
T. Schiex, G. Verfaillie, and M. M. Zytnicki
Max-csp competition 2007: toolbar/toulbar2 solver brief description
In M.R.C. van Dongen, Christophe Lecoutre, and Olivier Roussel,
editors, Proceedings of the Second International CSP Solver
Competition, pages 19–21, 2008
- 118
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Federico Heras, Javier Larrosa, Simon de Givry, and Thomas Schiex
2006 and 2007 max-sat evaluations: Contributed instances
JSAT, 4(2-4):239–250, 2008
- 119
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J. Larrosa, F. Heras, and S. de Givry
A logical approach to efficient max-sat solving
Artificial Intelligence, 172(2–3):204–233, 2008
- 120
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M. Cooper, S. de Givry, and T. Schiex
Optimal soft arc consistency
In Proc. of IJCAI-07, pages 68–73, Hyderabad, India, 2007
- 121
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M. Cooper, S. de Givry, and T. Schiex
The quest for the best arc consistent closure in weighted csp
In 8th International CP-06 Workshop on Preferences and Soft
Constraints, page 14p., Nantes, France, 2006
- 122
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S. de Givry, T. Schiex, and G. Verfaillie
Exploiting Tree Decomposition and Soft Local Consistency in
Weighted CSP
In Proc. of AAAI-06, Boston, MA, 2006
- 123
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Simon de Givry, Thomas Schiex, and Gérard Verfaillie
Combining tree decomposition and local consistency in max-csps
In 7th International CP-05 Workshop on Preferences and Soft
Constraints, page 15p., Sitges,Spain, 2005
- 124
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S. de Givry, M. Zytnicki, F. Heras, and J. Larrosa
Existential arc consistency: Getting closer to full arc consistency
in weighted CSPs
In Proc. of IJCAI-05, pages 84–89, Edinburgh, Scotland, 2005
- 125
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S. Bouveret, F. Heras, S.de Givry, J. Larrosa, M. Sanchez, and T. Schiex
Toolbar: a state-of-the-art platform for wcsp
https://miat.inrae.fr/degivry/ToolBar.pdf, 2004
- 126
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S. de Givry
Singleton consistency and dominance for weighted csp
In Proc. of 6th International CP-2004 Workshop on Preferences
and Soft Constraints, page 15p., Toronto, Canada, 2004
- 127
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S. de Givry, J. Larrosa, P. Meseguer, and T. Schiex
Solving max-sat as weighted csp
In Proc. of CP-03, pages 363–376, Kinsale, Ireland, 2003
- 128
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B. Cabon, S. de Givry, L. Lobjois, T. Schiex, and J.P. Warners
Radio Link Frequency Assignment
Constraints, 4(1):79–89, 1999
- 129
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B. Cabon, S. de Givry, and G. Verfaillie
Anytime Lower Bounds for Constraint Optimization Problems
In Proc. of CP-98, pages 117–131, Pisa, Italy, 1998
- 130
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S. de Givry, G. Verfaillie, and T. Schiex
Bounding the Optimum of Constraint Optimization Problems
In Proc. of CP-97, pages 405–419, Schloss Hagenberg, Austria,
October 29 - November 1 1997
- 131
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Gérard Verfaillie and Simon de Givry
Algorithmic problems and solutions in the valued constraint
satisfaction problem framework
In Proc. of the Fifth European Congress on Fuzzy and
Intelligent Technologies (EUFIT-97), Aachen, Germany, 1997
- 132
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S. de Givry and G. Verfaillie
Optimum Anytime Bounding for Constraint Optimization
Problems
In Proc. of the AAAI97 workshop on "Building Resource-Bounded
Reasoning Systems", Providence, RI, July 27 1997
-
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In French:
- 134
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Pierre Montalbano, Simon de Givry, and George Katsirelos
Contrainte de sac-à-dos à choix multiples dans les réseaux de
fonctions de coûts
In Proc. of JFPC-21, pages 1–11, Nice, France, 2021
- 135
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Fulya Trösser, Simon de Givry, and George Katsirelos
Heuristiques exploitant la relaxation linéaire pour l'optimisation
dans les réseaux de fonction de coût
In Proc. of JFPC-19, pages 77–86, Albi, France, 2019
- 136
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M. Ruffini, J. Vucinic, S. de Givry, G. Katsirelos, S. Barbe, and T. Schiex
Qualité et diversité garanties dans les réseaux de fonctions de
coût
In Proc. of JFPC-19, pages 143–152, Albi, France, 2019
- 137
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Abdelkader Ouali, David Allouche, Simon de Givry, Samir Loudni, Yahia Lebbah,
Francisco Eckhardt, and Lakhdar Loukil
Vns itératif guidé par la décomposition arborescente pour la
minimisation d'énergie dans les modèles graphiques
In Proc. of JFPC-18, pages 123–124, Amiens, France, 2018
- 138
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Abdelkader Ouali, David Allouche, Simon de Givry, Samir Loudni, Yahia Lebbah,
Francisco Eckhardt, and Lakhdar Loukil
Recherche complète à voisinages variables guidée par la
décomposition arborescente pour la minimisation d'énergie dans les modèles
graphiques
In Journées Francophones sur les Réseaux Bayésiens
et les Modèles Graphiques Probabilistes, pages 107–113, Toulouse,
France, 2018
- 139
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B Hurley, B O'Sullivan, D Allouche, G Katsirelos, T Schiex, Matthias Zytnicki,
and S de Givry
Comparaison de logiciels d'optimisation discrète sur une
collection multi-langage de modèles graphiques
In Journées Francophones sur les Réseaux Bayésiens
et les Modèles Graphiques Probabilistes, page 19 pages,
Clermont-Ferrand, France, 2016
- 140
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D Allouche, S de Givry, B Hurley, G Katsirelos, B O'Sullivan, and T Schiex
Une comparaison de logiciels d'optimisation sur une large collection
de modèles graphiques
In Proc. of JFPC-14, pages 301–310, Angers, France, 2014
https://miat.inrae.fr/degivry/Givry14bpres.pdf (slides in French)
- 141
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M. Cooper, S. de Givry, and T. Schiex
Panorama de l'Intelligence Artificielle, volume II: Algorithmes
pour l'intelligence artificielle, chapter Réseaux de contraintes valués
Cépaduès, 2014
- 142
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S de Givry, editor
Actes des Huitièms Journées Francophones de Programmation
par Contraintes, Toulouse, France, 2012. Organized by C. Garion and MJ
Huguet and T. Schiex
- 143
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D Allouche, C Bessiere, P Boizumault, S de Givry, P Gutierrez, S Loudni,
JP Métivier, and T Schiex
Filtrage de fonctions de coût globales décomposables
In Proc. of JFPC-12, pages 15–24, Toulouse, France, 2012
- 144
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A Favier, S de Givry, A Legarra, and T Schiex
Décomposition par paire pour l'optimisation combinatoire dans les
modèles graphiques
In Proc. of JFPC-11, Lyon, France, 2011
- 145
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S de Givry
Optimisation combinatoire dans les réseaux de fonctions de coût
Habilitation à dirigé des recherches, UPS, Toulouse, March 29,
2011
https://miat.inrae.fr/degivry/Givry11a_pres.pdf
- 146
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A. Favier, S. de Givry, and P. Jégou
Comptage de solutions en exploitant la structure du graphe de
contraintes
In Actes des Cinquièmes Journées Francophones de Programmation
par Contraintes, Orléans, 2009
- 147
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M Sanchez, D Allouche, S de Givry, and T Schiex
Algorithme des poupées russes exploitant une décomposition
arborescente
In Yves Deville, editor, Actes des Cinquièmes Journées
Francophones de Programmation par Contraintes, Orléans, 2009
- 148
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M. Cooper, S. de Givry, M. Sanchez, T. Schiex, and M. Zytnicki
Cohérence d'arc virtuelle pour les csp pondérés
In Proc. of JFPC-08, Nantes, France, 2008
- 149
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S. de Givry, T. Schiex, and G. Verfaillie
Décomposition arborescente et cohérence locale souple dans les
csp pondérés
In Proc. of JFPC-06, page 10p., N&̂#305;mes, France, 2006
- 150
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M. Zytnicki, F. Heras, S. de Givry, and J. Larrosa
Cohérence d'arc existentielle: un pas de plus vers la cohérence
d'arc complète
In Proc. of JFPC-05, pages 139–148, Lens, France, 2005
- 151
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Simon de Givry
Minorants de problèmes de minimisation de violation de
contraintes : recherche de bonnes relaxations à l'aide de méthodes
incomplètes
In Proc. of JNPC-99, Lyon, France, 1999
- 152
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Simon de Givry
Algorithmes d'optimisation sous contraintes étudiés dans un
cadre temps réel
PhD thesis, École Nationale Supérieure de
l'Aéronautique et de l'Espace, Toulouse, France, 1998
- 153
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Simon de Givry and Gérard Verfaillie
Problèmes d'optimisation sous contraintes : Encadrement anytime de l'optimum
In Proc. of JNPC-97, pages 33–39, Rennes, France, 21-22 avril
1997
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Constraint Programming
- 155
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Thomas Schiex and Simon de Givry, editors
Principles and Practice of Constraint Programming - 25th
International Conference, CP 2019, Stamford, CT, USA, September 30 -
October 4, 2019, Proceedings, volume 11802 of Lecture Notes in Computer
Science. Springer, 2019
- 156
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S. de Givry and L. Jeannin
A unified framework for partial and hybrid search methods in
constraint programming
Computer & Operations Research, 33(10):2805–2833, 2006
- 157
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L. Jeannin and S. de Givry
Network planning with constraint programming (short paper)
In Proc. of International Network Optimization Conference,
Evry/Paris, France, October 27-29 2003
- 158
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S. de Givry and L. Jeannin
ToOLS: A library for partial and hybrid search methods
In Proc. of CP-AI-OR'2003, pages 124–138, Montréal, Canada,
2003
- 159
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S. de Givry, L. Jeannin, F. Josset, J. Mattioli, N. Museux, and P. Savéant
The THALES constraint programming framework for hard and soft
real-time applications
The PLANET Newsletter, Issue 5 ISSN 1610-0212, pages 5-7, December
2002
http://planet.dfki.de/service/Resources/Rome/degivry.pdf (slides)
- 160
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S. de Givry, P. Gérard, L. Jeannin, J. Mattioli, N. Museux, and P. Savéant
A constraint optimization framework for real-time applications
In Proc. of AIPS-2002 Workshop on On-line Planning and
Scheduling, Toulouse, France, 2002
- 161
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J. Mattioli, N. Museux, J. Jourdan, P. Savéant, and S. de Givry
A constraint optimization framework for mapping a digital signal
processing application onto a parallel architecture
In Proc. of CP-01, pages 701–715, Paphos, Cyprus, 2001
- 162
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S. de Givry and J. Mattioli
Proc. of CP-2001 workshop on on-line combinatorial problem solving
and constraint programming (OLCP'01)
Paphos, Cyprus, 2001
- 163
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S. de Givry, Y. Hamadi, J. Mattioli, P. Gérard, M. Lema&̂#305;tre,
G. Verfaillie, A. Aggoun, I. Gouachi, T. Benoist, E. Bourreau, F. Laburthe,
P. David, S. Loudni, and S. Bourgault
Towards an on-line optimisation framework
In CP-2001 Workshop on On-Line combinatorial problem solving and
ConstraintProgramming (OLCP'01), pages 45–61, Paphos, Cyprus, December 1
2001
- 164
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S. de Givry, P. Gérard, J. Jourdan, J. Mattioli, N. Museux, and P. Savéant
How does constraint technology meet industrial constraints?
In Proc. of ESA workshop on On-Board Autonomy, pages 189–200,
Noordwijk, The Netherlands, 2001
- 165
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S. de Givry, G. Verfaillie, and D. Lesaint
On-line scheduling roadmap
Chapter in the PLANET Roadmap on AI Planning and Scheduling, 2001
http://planet.dfki.de/service/Resources/Roadmap/Roadmap.pdf
http://planet.dfki.de/service/Resources/Marseille/SimonDeGivry/index.html
(slides)
http://www.informatik.uni-ulm.de/ki/Planet/TCU-olps/
- 166
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Jean Jourdan, Simon de Givry, and Pierre Savéant
Designing limited search algorithms for time constrained
combinatorial optimization problems
Technical report, Thales Research & Development, 1999
-
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In French:
- 168
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S. de Givry and L. Jeannin
Modélisation et résolution en programmation par contraintes
Gestion des prises de vue réalisées par un satellite agile
d'observation de la Terre. 3ème challenge ROADEF, Avignon, France, 2003
- 169
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L. Jeannin and S. de Givry
Optimisation des évolutions d'un réseau télécoms
In Proc. of JFPLC-03, pages 183–186, Amiens, France, 2003
- 170
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L. Jeannin and S. de Givry
Aide à la conception de réseaux télécoms
In Proc. of ROADEF-03, pages 369–370, Avignon, France, 2003
- 171
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S. de Givry and Y. Hamadi
Procédé d'aide à la conception d'algorithmes d'optimisation
prenant en compte une limite de temps
Brevet THALES numéro 0115193, 2001
- 172
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Simon de Givry, Pierre Savéant, and Jean Jourdan
Optimisation combinatoire en temps limité : Depth first branch and
bound adaptatif
In Proc. of JFPLC-99, pages 161–178, Lyon, France, 1999
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Intelligent real-time systems
- 174
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Martin Adelantado and Simon de Givry
Reactive/Anytime Agents: Towards Intelligent Agents with
Real-Time Performance
In IJCAI'95 Workshop on Anytime Algorithms and Deliberation
Scheduling, Montreal, Canada, August 21-25 1995
- 175
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Martin Adelantado, Frédéric Boniol, and Simon de Givry
Saturne: a reactive - anytime programming model for intelligent
embedded real-time systems
In 3rd IEEE Workshop on Parallel and Distributed Real-Time
Systems, Santa Barbara, California, April 24-26 1995
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In French:
- 177
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Martin Adelantado, Frédéric Boniol, Augusto Burgueno, Simon de Givry, and
Florence Pagani
Un modèle de systèmes hybrides pour le contrôle de processus
temps-réel interrogeables
In Journées Formalisation des Activités Concurrentes,
Université Paul Sabatier-IRIT, Toulouse, France, 7-8 février 1996