Precisely describes the best map in the heap.
The bestprintd command is invoked as:
CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA). CarthaGene comes with ABSOLUTELY NO WARRANTY. CarthaGene is free software. You are welcome to redistribute it, under certain conditions. See the License file for information. Type 'help' for help. CG> dsload Data/bc.cg {1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b... CG> sem Map -1 : log10-likelihood = -291.76 -------: Set : Marker List ... 1 : MS1 MS2 MS3 MS4 MS5 MS6 MS7 MS8 MS9 MS10 MS11 MS12 MS13 MS14 MS15 MS... CG> flips 6 0 1 ... CG> bestprintd Map 9 : log10-likelihood = -291.76, log-e-likelihood = -671.79 -------: Data Set Number 1 : Markers Distance Cumulative Distance Theta 2pt Pos Id name Haldane Haldane Kosambi (%%age) LOD 1 1 MS1 19.5 cM 0.0 cM 16.8 cM 16.2 % 15.7 2 2 MS2 0.6 cM 19.5 cM 0.6 cM 0.6 % 47.6 3 3 MS3 5.8 cM 20.1 cM 5.5 cM 5.5 % 35.1 4 4 MS4 3.7 cM 25.9 cM 3.6 cM 3.5 % 21.1 5 5 MS5 3.7 cM 29.6 cM 3.6 cM 3.6 % 15.4 6 6 MS6 1.6 cM 33.3 cM 1.6 cM 1.6 % 17.3 7 7 MS7 6.7 cM 34.9 cM 6.3 cM 6.3 % 35.1 8 8 MS8 2.2 cM 41.6 cM 2.2 cM 2.2 % 40.8 9 9 MS9 3.0 cM 43.8 cM 2.9 cM 2.9 % 7.2 10 10 MS10 5.4 cM 46.8 cM 5.1 cM 5.1 % 3.6 11 11 MS11 8.6 cM 52.2 cM 7.9 cM 7.9 % 11.9 12 13 MS13 0.0 cM 60.7 cM 0.0 cM 0.0 % 18.7 13 12 MS12 0.0 cM 60.7 cM 0.0 cM 0.0 % 3.6 14 14 MS14 5.8 cM 60.7 cM 5.5 cM 5.5 % 0.0 15 15 MS15 4.6 cM 66.6 cM 4.4 cM 4.4 % 26.6 16 16 MS16 26.1 cM 71.1 cM 21.6 cM 20.3 % 6.3 17 17 MS17 0.0 cM 97.2 cM 0.0 cM 0.0 % 16.0 18 18 MS18 4.9 cM 97.2 cM 4.7 cM 4.6 % 27.1 19 19 MS19 3.0 cM 102.1 cM 2.9 cM 2.9 % 34.8 20 20 MS20 ---------- ---------- 105.1 cM 95.0 cM 20 markers, log10-likelihood = -291.76 log-e-likelihood = -671.79 9
Thomas Schiex 2018-03-23