Subsections
maprintd
Precisely describes the map whose numerical Id in the heap is given.
The maprintd command is invoked either:
- maprintd Options
- maprintd MapId
The maprintd command prints an extensive description of the
map whose numerical id has been given as argument. For each data-set
for which parameters have been estimated (merged using
mergor), the map is described by successively giving, line
per line:
- the position of the marker in the overall map for this data set
- the numerical Id of the marker
- the name of the marker (truncated to a mxaimum number of characters)
- the Haldane distance to the next marker (if any). Rays are used
for RH data.
- The cumulative distance of the marker from the beginning of the
map (Haldane/Ray).
- For genetic data, the Kosambi distance from the next marker (if any)
- the estimated recombination ratio/breakage with the next marker
- the two-points LOD with the next marker
Then the length of the map, the number of markers and the
and natural logarithm of the likelihood of the map are displayed.
- Options : -u to obtain the synopsys of the normal
use, -h to print a one line description, -H to
print a short help.
- MapId: the numerical id of the map in the heap.
nothing.
CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).
CarthaGene comes with ABSOLUTELY NO WARRANTY.
CarthaGene is free software. You are welcome to redistribute it,
under certain conditions. See the License file for information.
Type 'help' for help.
CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
CG> buildfw 3 3 {} 0
...
CG> maprintd 0
Map 0 : log10-likelihood = -14.70, log-e-likelihood = -33.86
-------:
Data Set Number 1 :
Markers Distance Cumulative Distance Theta 2pt
Pos Id name Haldane Haldane Kosambi (%%age) LOD
1 8 MS8 3.3 cM 0.0 cM 3.2 cM 3.2 % 7.4
2 10 MS10 12.2 cM 3.3 cM 11.0 cM 10.8 % 2.7
3 14 MS14 ---------- ----------
15.5 cM 14.2 cM
3 markers, log10-likelihood = -14.70
log-e-likelihood = -33.86
CG>
Thomas Schiex
2018-03-23