bestprint

Concisely describes the best map in the heap.

Synopsis:

The bestprint command is invoked as:

• bestprint

Description:

The bestprint command prints a concise description of the best map in the heap. The $\log_{10}$-likelihood of the map is printed followed by the order of all the markers (by name), and for each data-set.

Arguments:

None.

Returns:

nothing.

Example:

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
CG> sem

Map -1 : log10-likelihood =  -291.76
-------:
 Set : Marker List ...
   1 : MS1 MS2 MS3 MS4 MS5 MS6 MS7 MS8 MS9 MS10 MS11 MS12 MS13 MS14 MS15 MS...

CG> flips 6 0 1
...
CG> bestprint

Map  9 : log10-likelihood =  -291.76
-------:
 Set : Marker List ...
   1 : MS1 MS2 MS3 MS4 MS5 MS6 MS7 MS8 MS9 MS10 MS11 MS13 MS12 MS14 MS15 MS...
9

See also:

• bestprintd (2.4.12)
• heaprint (2.4.4)