mapocb

Returns the number of Obligate Chromosome Breaks for the map whose numerical Id in the heap is given.

Synopsis:

The mapocb command is invoked either:

• mapocb Options
• mapocb MapId

Description:

The mapocb command computes the number of Obligate Chromosome Breaks for the map whose numerical Id in the heap is given as argument. For each data-set, for each individual/hybrid, for each pair of consecutive markers in the map, there is an obligate chromosome break if we have the corresponding typing data ``0 1'' or ``1 0'' (e.g. 0=Absent, 1=Here). mapocb returns the sum of all obligate chromosome breaks.

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• MapId: the numerical id of the map in the heap.

Returns:

number of Obligate Chromosome Breaks.

Example:

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

CG> dsload Data/rh.cg
{1 haploid RH 53 118 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/rh.cg}
CG> sem

Map -1 : log10-likelihood = -1090.04
-------:
 Set : Marker List ...
   1 : MS1 MS13 MS15 MS17 MS19 MS2 MS20 MS3 MS4 MS5 MS6 MS7 MS8 MS9 G1 G2 G...

CG> mapocb 0
1025
CG>

See also:

• maprint (2.4.8)