mrkfr2p

Displays the two-points recombination (or breakage) ratio matrix of the current loci selection.

Synopsis :

The mrkfr2p command is invoked either as:

• mrkfr2p Options
• mrkfr2p

Description :

mrkfr2p prints the two-points recombination (or breakage) ratio for all pairs of loci in the current list of selected loci.

Arguments :

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Returns:

nothing.

Example:

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
CG> group 0.1 9

Linkage Groups :
---------------:
LOD threshold=9.00
Distance threshold=10.00:

 Group ID : Marker ID List ...
        1 : 17 19 20 18
        2 : 14
        3 : 11 13 12 16 15
        4 : 10
        5 : 2 4 3 7 6 5 9 8
        6 : 1
6
CG> mrkselset [groupget 3]

CG> mrkfr2p

Print two-points recombination-fraction matrices of the locus selection :
---------------------------------------------------------------------------:

        MS11  MS13  MS12  MS16  MS15
       ------------------------------
 MS11 |------0.077 0.101 0.211 0.156
 MS13 |0.077 ------0.000 0.141 0.150
 MS12 |0.101 0.000 ------0.082 0.035
 MS16 |0.211 0.141 0.082 ------0.049
 MS15 |0.156 0.150 0.035 0.049 ------

See also:

• mrklod2p (2.3.7)
• mrkdist2p (2.3.2)