Displays the two-points LOD matrix for all currently active markers.
The mrklod2p command is invoked either as:
mrklod2p prints the two-points LOD for all pairs of loci in the list of currently selected loci.
CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA). CarthaGene comes with ABSOLUTELY NO WARRANTY. CarthaGene is free software. You are welcome to redistribute it, under certain conditions. See the License file for information. Type 'help' for help. # we first load a data set CG> dsload Data/bc.cg {1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b... # and select some markers in it CG> mrkselset {11 12 13 14 15 16 17 18 19 20} # then ask for the 2pt LOD matrix CG> mrklod2p 11 12 13 14 15 16 17 18 19 20 MS11 MS12 MS13 MS14 MS15 MS16 MS17 MS18 MS19 MS20 ------------------------------------------------------------ MS11 |------ 10.9 11.9 3.6 3.6 5.5 0.1 0.4 0.6 0.5 MS12 | 10.9 ------ 18.7 3.6 26.5 25.9 2.1 4.6 4.2 4.3 MS13 | 11.9 18.7 ------ 6.0 4.7 9.7 0.9 0.7 0.6 0.7 MS14 | 3.6 3.6 6.0 ------ 0.0 3.6 1.5 0.0 0.5 0.7 MS15 | 3.6 26.5 4.7 0.0 ------ 26.6 3.8 6.9 6.9 6.2 MS16 | 5.5 25.9 9.7 3.6 26.6 ------ 6.3 10.3 8.2 7.7 MS17 | 0.1 2.1 0.9 1.5 3.8 6.3 ------ 16.0 14.1 11.3 MS18 | 0.4 4.6 0.7 0.0 6.9 10.3 16.0 ------ 27.1 22.9 MS19 | 0.6 4.2 0.6 0.5 6.9 8.2 14.1 27.1 ------ 34.8 MS20 | 0.5 4.3 0.7 0.7 6.2 7.7 11.3 22.9 34.8 ------