Subsections


verbset

Sets the verbosity of the output of several commands.

Synopsis:

The verbset command is invoked either as:

Description:

Arguments:

Returns:

nothing.

Example:

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
CG> sem

Map -1 : log10-likelihood =  -291.76
-------:
 Set : Marker List ...
   1 : MS1 MS2 MS3 MS4 MS5 MS6 MS7 MS8 MS9 MS10 MS11 MS12 MS13 MS14 MS15 MS...

CG> verbset 2

CG> sem

Map -1 : log10-likelihood =  -291.76, log-e-likelihood =  -671.79
-------:

Data Set Number  1 :

             Markers Distance    Cumulative  Distance   Theta       2pt
Pos  Id name         Haldane     Haldane     Kosambi    (%%age)      LOD

  1   1  MS1          19.5 cM      0.0 cM     16.8 cM    16.2 %     15.7
  2   2  MS2           0.6 cM     19.5 cM      0.6 cM     0.6 %     47.6
  3   3  MS3           5.8 cM     20.1 cM      5.5 cM     5.5 %     35.1
  4   4  MS4           3.7 cM     25.9 cM      3.6 cM     3.5 %     21.1
  5   5  MS5           3.7 cM     29.6 cM      3.6 cM     3.6 %     15.4
  6   6  MS6           1.6 cM     33.3 cM      1.6 cM     1.6 %     17.3
  7   7  MS7           6.7 cM     34.9 cM      6.3 cM     6.3 %     35.1
  8   8  MS8           2.2 cM     41.6 cM      2.2 cM     2.2 %     40.8
  9   9  MS9           3.0 cM     43.8 cM      2.9 cM     2.9 %      7.2
 10  10 MS10           5.4 cM     46.8 cM      5.1 cM     5.1 %      3.6
 11  11 MS11           8.6 cM     52.2 cM      7.9 cM     7.9 %     10.9
 12  12 MS12           0.0 cM     60.7 cM      0.0 cM     0.0 %     18.7
 13  13 MS13           0.0 cM     60.7 cM      0.0 cM     0.0 %      6.0
 14  14 MS14           5.8 cM     60.7 cM      5.5 cM     5.5 %      0.0
 15  15 MS15           4.6 cM     66.6 cM      4.4 cM     4.4 %     26.6
 16  16 MS16          26.1 cM     71.1 cM     21.6 cM    20.3 %      6.3
 17  17 MS17           0.0 cM     97.2 cM      0.0 cM     0.0 %     16.0
 18  18 MS18           4.9 cM     97.2 cM      4.7 cM     4.6 %     27.1
 19  19 MS19           3.0 cM    102.1 cM      2.9 cM     2.9 %     34.8
 20  20 MS20        ----------              ----------
                     105.1 cM                 95.0 cM


       20 markers, log10-likelihood =  -291.76
                   log-e-likelihood =  -671.79

See also:



Thomas Schiex 2018-03-23