Concisely describes the best map in the current Pareto frontier.
The paretobestprint command is invoked as:
CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA). CarthaGene comes with ABSOLUTELY NO WARRANTY. CarthaGene is free software. You are welcome to redistribute it, under certain conditions. See the License file for information. Type 'help' for help. CG> dsload Data/rh1_true.cg {1 haploid RH 110 93 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/rh1... CG> dsload Data/order1_ref.cg {2 order 110 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/order1_ref.cg} CG> dsmergor 1 2 {3 merged by order 110 93} #build a Pareto frontier from scratch CG> paretolkh 10 1 0 ... #show the best map in the frontier CG> paretobestprint 1 Pareto frontier approximation (coverage: 39 / 39 = 100.00 %): Ranges: Log10-likelihood [-1012.378,-957.848] / BP [3,41] = 1.4350 Id: 38 BP: 41 Log10-like: -957.848 Log10-like+bp: -1095.795 Id: 37 BP: 40 Log10-like: -957.848 Log10-like+bp: -1092.218 Id: 36 BP: 39 Log10-like: -958.169 Log10-like+bp: -1088.958 do... Id: 35 BP: 38 Log10-like: -957.848 Log10-like+bp: -1085.055 Id: 34 BP: 37 Log10-like: -957.919 Log10-like+bp: -1081.540 Id: 33 BP: 36 Log10-like: -958.240 Log10-like+bp: -1078.274 do... Id: 32 BP: 35 Log10-like: -958.240 Log10-like+bp: -1074.685 Id: 31 BP: 34 Log10-like: -958.541 Log10-like+bp: -1071.396 Id: 30 BP: 33 Log10-like: -958.552 Log10-like+bp: -1067.816 Id: 29 BP: 32 Log10-like: -962.633 Log10-like+bp: -1068.306 do... Id: 28 BP: 31 Log10-like: -959.105 Log10-like+bp: -1061.187 Id: 27 BP: 30 Log10-like: -961.354 Log10-like+bp: -1059.845 Id: 26 BP: 29 Log10-like: -962.946 Log10-like+bp: -1057.847 do... Id: 25 BP: 28 Log10-like: -961.907 Log10-like+bp: -1053.220 Id: 24 BP: 27 Log10-like: -963.408 Log10-like+bp: -1051.134 do... Id: 23 BP: 26 Log10-like: -962.193 Log10-like+bp: -1046.335 Id: 22 BP: 25 Log10-like: -964.519 Log10-like+bp: -1045.080 do... Id: 21 BP: 24 Log10-like: -963.868 Log10-like+bp: -1040.851 Id: 20 BP: 23 Log10-like: -965.543 Log10-like+bp: -1038.953 do... Id: 19 BP: 22 Log10-like: -965.020 Log10-like+bp: -1034.861 Id: 18 BP: 21 Log10-like: -966.693 Log10-like+bp: -1032.971 Id: 17 BP: 20 Log10-like: -968.755 Log10-like+bp: -1031.474 do... Id: 16 BP: 19 Log10-like: -968.368 Log10-like+bp: -1027.536 Id: 15 BP: 18 Log10-like: -970.430 Log10-like+bp: -1026.054 Id: 14 BP: 17 Log10-like: -972.693 Log10-like+bp: -1024.781 Id: 13 BP: 16 Log10-like: -973.742 Log10-like+bp: -1022.303 Id: 12 BP: 15 Log10-like: -976.323 Log10-like+bp: -1021.368 Id: 11 BP: 14 Log10-like: -979.369 Log10-like+bp: -1020.907 Id: 10 BP: 13 Log10-like: -981.178 Log10-like+bp: -1019.220 Id: 9 BP: 12 Log10-like: -982.889 Log10-like+bp: -1017.447 Id: 8 BP: 11 Log10-like: -985.896 Log10-like+bp: -1016.984 Id: 7 BP: 10 Log10-like: -987.743 Log10-like+bp: -1015.372 Id: 6 BP: 9 Log10-like: -991.611 Log10-like+bp: -1015.797 Id: 5 BP: 8 Log10-like: -993.404 Log10-like+bp: -1014.158 Id: 4 BP: 7 Log10-like: -996.049 Log10-like+bp: -1013.383 **... Id: 3 BP: 6 Log10-like: -1001.610 Log10-like+bp: -1015.531 Id: 2 BP: 5 Log10-like: -1003.668 Log10-like+bp: -1014.173 Id: 1 BP: 4 Log10-like: -1008.346 Log10-like+bp: -1015.405 Id: 0 BP: 3 Log10-like: -1012.378 Log10-like+bp: -1015.874 Map 4 : log10-likelihood = -996.05 -------: Set : Marker List ... 1 : UniSTS158779 UniSTS164109 UniSTS158781 UniSTS158776 UniSTS207126 Uni... 2 : UniSTS158779 UniSTS164109 UniSTS158781 UniSTS158776 UniSTS207126 Uni... 4 CG>
Thomas Schiex 2018-03-23