mrkmerget

Retrieves the sets of markers that have been merged together.

Synopsis :

The mrkmerget command is invoked either as:

• mrkmerget Options

Description:

The command is used to retrieve the sets of markers that have been merged together.

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Returns :

a list of list of markers id. The first marker of a sublist represent the others.

Example :

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

# we first load a data set
CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
# and ask for markers that can be merged
CG> mrkdouble

Possible double markers:

                MS9 = MS10            [7.2]
                MS9 = MS14            [3.6]
               MS10 = MS11            [3.6]
               MS11 = MS14            [3.6]
               MS12 = MS13            [18.7]
               MS12 = MS14            [3.6]
               MS13 = MS14            [6.0]
               MS14 = MS16            [3.6]
               MS14 = MS17            [1.5]
               MS17 = MS18            [16.0]


# then merge markers 9 and 10 in 9.
CG> mrkmerge [mrkid MS9] [mrkid MS10]

#...
CG> mrkmerge [mrkid MS12] [mrkid MS13]

CG> mrkmerge [mrkid MS12] [mrkid MS14]

#retrive the information
CG> mrkmerget
{9 10 } {12 13 14 }

See also:

• mrkmerge (2.3.9)