mrklod2p

Displays the two-points LOD matrix for all currently active markers.

Synopsis :

The mrklod2p command is invoked either as:

• mrklod2p Options
• mrklod2p

Description:

mrklod2p prints the two-points LOD for all pairs of loci in the list of currently selected loci.

Arguments :

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Example:

   CarthaGene version 1.2-LKH, Copyright (c) 1997-2010 (INRA).

   CarthaGene comes with ABSOLUTELY NO WARRANTY.
   CarthaGene is free software. You are welcome to redistribute it,
   under certain conditions. See the License file for information.

Type 'help' for help.

# we first load a data set
CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
# and select some markers in it
CG> mrkselset {11 12 13 14 15 16 17 18 19 20}

# then ask for the 2pt LOD matrix
CG> mrklod2p

             11    12    13    14    15    16    17    18    19    20
           MS11  MS12  MS13  MS14  MS15  MS16  MS17  MS18  MS19  MS20
          ------------------------------------------------------------
    MS11 |------ 10.9  11.9   3.6   3.6   5.5   0.1   0.4   0.6   0.5
    MS12 | 10.9 ------ 18.7   3.6  26.5  25.9   2.1   4.6   4.2   4.3
    MS13 | 11.9  18.7 ------  6.0   4.7   9.7   0.9   0.7   0.6   0.7
    MS14 |  3.6   3.6   6.0 ------  0.0   3.6   1.5   0.0   0.5   0.7
    MS15 |  3.6  26.5   4.7   0.0 ------ 26.6   3.8   6.9   6.9   6.2
    MS16 |  5.5  25.9   9.7   3.6  26.6 ------  6.3  10.3   8.2   7.7
    MS17 |  0.1   2.1   0.9   1.5   3.8   6.3 ------ 16.0  14.1  11.3
    MS18 |  0.4   4.6   0.7   0.0   6.9  10.3  16.0 ------ 27.1  22.9
    MS19 |  0.6   4.2   0.6   0.5   6.9   8.2  14.1  27.1 ------ 34.8
    MS20 |  0.5   4.3   0.7   0.7   6.2   7.7  11.3  22.9  34.8 ------

See also:

• mrkselset (2.3.14)
• mrkmerge (2.3.9)