RNA-seq

Transcriptomic analysis of the interactions between Fibrobacter succinogenes S85, Selenomonas ruminantium PC18 and a live yeast strain used as a ruminant feed additive

Pauline Desvignes, Philippe Ruiz, Laurie Guillot, Jeanne Danon, Alexandra Durand, Martin Beaumont, Frédérique Chaucheyras-Durand, Evelyne Forano

Microbial interactions RNA-seq Saccharomyces cerevisiae Selenomonas ruminantium Fibrobacter succinogenes

srnadiff is a R/BioConductor package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation.

20 oct. 2022

RNA-seq Bioconductor R

mmquant is a RNA-Seq quantification tool, with a dedicated quantification of multiple-mapping reads. While mmquant is developped in C++, the R binding is available from Rmmquant BioConductor repository.

15 sept. 2017

RNA-seq quantification Multi-mapping reads Bioconductor R

RNAseqNet is an R package that implements network inference with log-linear Poisson Graphical Model. Hot-deck multiple imputation method can be used to improve the reliability of the inference with an auxiliary dataset.

19 avr. 2017

RNA-seq network inference missing data CRAN R

RNAseqNet