Pangenome

Assembly of a pangenome uncovers novel non-reference unique insertion sequences in cattle highlighting their genetic diversity

ARMH3 gene cattle EPHA5 gene Non-reference unique insertion Pangenome structural variants

Detecting intra-species divergent sequences at base pair resolution with PanCons

PanAbyss is a tool to manipulate and visualize pangenomes variation graphs. It is based on a graph database modelisation (Neo4j) created from a pangenome graph (GFA file) and annotation files (GFF or GTF).

04 déc. 2025

application Pangenome visualisation

PanAbyss

Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes

Structural variant Bovin Pangenome

Whole genome short read data from 567 bulls of 14 breeds provides insight into genetic diversity of French cattle

Pangenome Mutations Polymorphism SNP Bovine Variants Sequencing

GrAnnoT, a tool for efficient and reliable annotation transfer through pangenome graph

Pangenome graph annotation transfer

The pangenome of European white oaks : A new approach to assess genetic diversity

génotypage simulations graphe de variation génétique Pangenome diversité génétique Chênes blancs européens