RNA-seq

No detectable impact of chronic oral lactic acid exposure on honey bee health: Insights from survival, lactate accumulation and head transcriptome
HAL Citation DOI
Treatment Apis melifera Survival Organic acids RNA-seq Sublethal effect
Transcriptomic analysis of the interactions between Fibrobacter succinogenes S85, Selenomonas ruminantium PC18 and a live yeast strain used as a ruminant feed additive
HAL PDF Citation DOI
Microbial interactions RNA-seq Saccharomyces cerevisiae Selenomonas ruminantium Fibrobacter succinogenes
srnadiff
srnadiff is a R/BioConductor package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation.
20 oct. 2022
Citation URL DOI
RNA-seq Bioconductor R
mmquant
mmquant is a RNA-Seq quantification tool, with a dedicated quantification of multiple-mapping reads. While mmquant is developped in C++, the R binding is available from Rmmquant BioConductor repository.
15 sept. 2017
Citation DOI URL
RNA-seq quantification Multi-mapping reads Bioconductor R
RNAseqNet
RNAseqNet is an R package that implements network inference with log-linear Poisson Graphical Model. Hot-deck multiple imputation method can be used to improve the reliability of the inference with an auxiliary dataset.
19 avr. 2017
Citation URL Source code DOI
RNA-seq network inference missing data CRAN R
RNAseqNet