Dernières publications

L’ensemble des publications du laboratoire peuvent être obtenues sur https://hal.inrae.fr/MIAT/.

Slim Ben-Jemaa, Gabriele Adam, Mekki Boussaha, Philippe Bardou, Christophe C. Klopp, Nathalie Mandonnet, Michel Naves (2023). Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Scientific Reports.

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Matthias ZYTNICKI (2023). srnaMapper: an optimal mapping tool for sRNA-Seq reads. version.

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Chloé Cerutti, Sophie Leroux, Paul Terzian, Joanna Lledo, David Gourichon, Jean-Noël Hubert, Yann Labrune, Rémy-Félix Serre, Céline Vandecasteele, Christophe C. Klopp, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Vincent Coustham, Frederique Pitel, Guillaume Devailly (2023). Transgenerational epigenetics in quail: whole genome DNA methylation analysis. Epigenetic Inheritance: Impact for Biology and Society.

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Agnès Bonnet, Sarah Maman, Laure Gress, Amandine Suin, Sabrina Legoueix, Céline Bravo, Yvon Billon, Nathalie Vialaneix, Cécile M. D. Bonnefont, Laurence Liaubet (2023). Transcriptome of the feto-maternal interface in pigs in late gestation: part2 - sow endometrium. Joint International Congress on Animal Science (EEAP 2023).

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Agnès Bonnet, Sarah Maman, Laure Gress, Amandine Suin, Céline Bravo, Gwendaëlle Cardenas, Yvon Billon, Laurianne Canario, Nathalie Vialaneix, Cécile M. D. Bonnefont, Laurence Liaubet (2023). Transcriptome of the feto-maternal interface in pigs in late gestation: part1fetal placenta. Joint International Congress on Animal Science (EEAP 2023).

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning *. Thirty-Second International Joint Conference on Artificial Intelligence (IJCAI-23).

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning. Thirty-Second International Joint Conference on Artificial Intelligence (IJCAI-23).

Alyssa Imbert, Nassim Duprat, Nathalie Marty-Gasset, Laure Gress, Cécile Canlet, Yvon Billon, Nathalie Vialaneix, Cécile M. D. Bonnefont, Agnès Bonnet, Laurence Liaubet (2023). 1H-NMR metabolomic study of Large White and Meishan pigs in late gestation: part 2 - sow endometrium. Joint International Congress on Animal Science (EEAP 2023).

Mekki Boussaha, Camille Eché, Clémentine Escouflaire, Cécile Grohs, Carole Iampietro, Aurélien Capitan, Denis Milan, Christine Gaspin, Sébastien Fritz, Cécile Donnadieu, Didier Boichard (2023). Search for new mutations in cattle by systemac whole genome resequencing. 39th International Society of Animal Genetics Conference.

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Marianne Defresne, Thomas Schiex, Sophie Barbe (2023). Scalable Coupling of Deep Learning with Logical Reasoning. PFIA'23.

Hanna Bacave, Pierre-Olivier Cheptou, Nikolaos Limnios, Nathalie Peyrard (2023). Non parametric observation driven HMM. 54 ièmes journées de Statistique de la SFdS.

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Ellen Laclef, Nathalie Debus, Patrick Taillandier, Eliel González García, Amandine Lurette (2023). Modelling the long-term consequences of implementing hormone-free reproductive management on the sustainability of a dairy sheep farm. Computers and Electronics in Agriculture.

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Camille Guilmineau, Marie Tremblay-Franco, Nathalie Vialaneix, Rémi Servien (2023). Modélisation de données métabolomiques longitudinales par voies métaboliques. Journées de statistique de la SFdS.

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Jacqueline Smith, James Alfieri, Nick Anthony, Peter Arensburger, Giridhar Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel Borodin, Rachel Carroll, Meya Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack Dekkers, Martijn Derks, Abigail Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven Fiddaman, Giulio Formenti, Laurent A.F. Frantz, Janet Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P. Godinez, Ashton Goodell, Jennifer A.M. Graves, Darren Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan Lamont, Margaret Lange, Anika Lanke, Denis Larkin, Greger Larson, John King N. Layos, Ophélie Lebrasseur, Lyubov Malinovskaya, Rebecca Martin, Maria Luisa Martin Cerezo, Andrew Mason, Fiona Mccarthy, Michael Mcgrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng'ang'a, Masahide Nishibori, Rebecca O'connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip Patel, Francesco Perini, María Ines Pigozzi, Krista Potter, Peter Price, Christian Reimer, Edward Rice, Nicolas Rocos, Thea Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna Torgasheva, Alan Tracey, Clive Tregaskes, Lonneke Vervelde, Ying Wang, Wesley Warren, Paul Waters, David Webb, Steffen Weigend, Anna Wolc, Alison Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou (2023). Fourth Report on Chicken Genes and Chromosomes 2022. Cytogenetic and Genome Research.

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Aurélie Mercadié, Eleonore Gravier, Gwendal Josse, Nathalie Vialaneix, Celine Brouard (2023). Extension de la NMF supervisée pour l'intégration de données omiques. Journée de Statistique de la SFdS.

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Olivier Gillet, Eric Daudé, Arnaud Saval, Clément Caron, Sébastien Rey-Coyrehourcq, Patrick Taillandier, Pierrick Tranouez (2023). ESCAPE - Simulation à base d'agents pour l'évacuation de populations lors des situations d'urgence. JFSMA- - Journées Francophones sur les Systèmes Multi-Agents.

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Matthias ZYTNICKI, Hoang-Giang Pham (2023). sRNA-pipe A Nextflow-based pipeline for small RNA analysis. JOBIM.

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Élise Maigné, Isabelle Sanchez, David Carayon, Joseph Tran, Jean-François Rey (2023). SK8 : Un service institutionnel de gestion et d'hébergement d'applications Shiny. Rencontres R 2023.

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Hanna Bacave, Pierre-Olivier Cheptou, Nikolaos Limnios, Nathalie Peyrard (2023). Non-parametric Observation Driven HMM.

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Laurence Liaubet, Gaelle Lefort, Sébastien Reigner, Jean Bailly, Camille Guilmineau, Nathalie Marty-Gasset, Laure Gress, Rémi Servien, Agnès Bonnet, Hélène Gilbert, Nathalie Vialaneix, Hélène Quesnel (2023). Neonatal metabolic profiling shows relationships between metabolites and biometric phenotypes related to piglet maturity at birth. 11th International Conference on Pig Reproduction (ICPR).

Alexis Hardy, Mélody Matelot, Amandine Touzeau, Christophe C. Klopp, Céline Lopez-Roques, Sandra Duharcourt, Matthieu Defrance (2023). DNAModAnnot: a R toolbox for DNA modification filtering and annotation. Bioinformatics.

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Alexis Mergez, Raphaël Mourad, Matthias ZYTNICKI (2023). DLScaff : Deep Learning and Hi-C data for chimeric contigs detection. JOBIM ( JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES ) 2023.

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Siegfried Dubois, Claire Lemaitre, Thomas Faraut, Matthias ZYTNICKI (2023). Comparaison et visualisation de graphes de pangénomes.

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Alyssa Imbert, Nathalie Marty-Gasset, Laure Gress, Cecile Bonnefont, Nathalie Vialaneix, Laurence Liaubet, Agnès Bonnet (2023). Characterization of the endometrial metabolome in late gestation. International Conference on Pig Reproduction 2023.

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Hajar Bouhamout, Benjamin Linard, Matthias ZYTNICKI (2023). Benchmarking read mapping on pangenomic variation graphs. jobim 2023.

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Sandra Plancade, Elodie Marchadier, Sylvie Huet, Adrienne Ressayre, Camille Noûs, Christine Dillmann (2023). A successive time-to-event model of phyllochron dynamics for hypothesis testing: application to the analysis of genetic and environmental effects in maize. Plant Methods.

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Pierre Montalbano, David Allouche, Simon De Givry, George Katsirelos, Tomáš Werner (2023). Virtual Pairwise Consistency in Cost Function Networks. 20th International Conference on the Integration of Constraint Programming, Artificial Intelligence, and Operations Research.

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Charles-Elie Rabier, Céline Delmas (2023). The SgenoLasso, a new Lasso method dedicated to extreme observations in genomics. International Conference on Robust Statistics.

Hilaire Drouineau, J Domange, Laurent Beaulaton, Patrick Lambert, Stéphanie Mahévas, Victor Picheny, Robert Faivre (2023). Calibration of a complex population dynamics model: from its development to results validation. Workshop on calibration of numerical code.

Olivier Aumont, Tamara Ben-Ari, Jérôme MARIETTE, Laurent Jeanneau, Aymeric Spiga, Gaelle Lefort, Philippe-E. Roche, Alexandre Santerne, André Estevez-Torres (2023). Traveling for academic research : patterns, determinants and mitigation options. EGU General Assembly 2023.

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Charles-Elie Rabier, Céline Delmas (2023). The AdaptSgenoLasso, an extended version of the SgenoLasso, for gene mapping and for genomic prediction using the extremes.

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Meritxell Vinyals, Régis Sabbadin, Stéphane Couture, Loïc Sadou, Rallou Thomopoulos, Kevin Chapuis, Baptiste Lesquoy, Patrick Taillandier (2023). Toward AI-designed innovation diffusion policies using agent-based simulations and reinforcement learning: The case of digital tool adoption in agriculture. Frontiers in Applied Mathematics and Statistics.

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Arnaud Saval, Duc Pham Minh, Kevin Chapuis, Pierrick Tranouez, Clément Caron, Eric Daudé, Patrick Taillandier (2023). Dealing with mixed and non-normative traffic. An agent-based simulation with the GAMA platform. PLoS ONE.

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Quang Chi Truong, Alexis Drogoul, Benoit Gaudou, Patrick Taillandier, Nghi Quang Huynh, Thao Hong Nguyen, Philip Minderhoud, Ha Nguyen Thi Thu, Etienne Espagne (2023). An Agent-Based Model for Land-Use Change Adaptation Strategies in the Context of Climate Change and Land Subsidence in the Mekong Delta. Sustainability.

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Simon De Givry (2023). toulbar2, an exact cost function network solver. 24ème édition du congrès annuel de la Société Française de Recherche Opérationnelle et d’Aide à la Décision ROADEF 2023.

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Marielle Brunette, Stéphane Couture (2023). Forest Insurance for Natural Events: An Overview by Economists. Forests.

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Samuel Buchet, Marianne Defresne, Simon De Givry, Manon Ruffini, Thomas Schiex (2023). Bilevel optimization and its bicriteria approximation in computational protein design. Société Française de Recherche Opérationnelle et d’Aide à la Décision ROADEF 2023.

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Axel Poulet, Ellyn Rousselot, Stéphane Téletchéa, Céline Noirot, Yannick Jacob, Josien van Wolfswinkel, Christophe Thiriet, Céline Duc (2023). The Histone Chaperone Network Is Highly Conserved in Physarum polycephalum. International Journal of Molecular Sciences.

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Tomáš Dlask, Tomáš Werner, Simon De Givry (2023). Super-Reparametrizations of Weighted CSPs: Properties and Optimization Perspective. Constraints, an International Journal.

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Laurence Liaubet, Camille Guilmineau, Gaelle Lefort, Yvon Billon, Sébastien Reigner, Jean Bailly, Nathalie Marty-Gasset, Laure Gress, Rémi Servien, Agnès Bonnet, Hélène Gilbert, Nathalie Vialaneix, Hélène Quesnel (2023). Plasma 1H-NMR metabolic and amino acid profiles of newborn piglets from two lines divergently selected for residual feed intake. Scientific Reports.

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Franck Taillandier, Benoit Gaudou, Frederic Amblard, Patrick Taillandier (2023). La modélisation Agent pour le Génie Civil. Academic Journal of Civil Engineering.

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Marielle Brunette, Stéphane Couture (2023). L'assurance contre les risques naturels en forêt : une synthèse de la littérature en économie. INRAE Sciences Sociales.

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Simon Labarthe, Sandra Plancade, Sébastien Raguideau, Florian Plaza Onate, Emmanuelle Le Chatelier, Marion Leclerc, Béatrice Laroche (2023). Four functional profiles for fibre and mucin metabolism in the human gut microbiome.

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P. Debaeke, F. Attia, Luc Champolivier, Jean-François Dejoux, Arnaud Micheneau, A. Al Bitar, Ronan Trépos (2023). Forecasting sunflower grain yield using remote sensing data and statistical models. European Journal of Agronomy.

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Sam Nicol, Marie-Josée Cros, Nathalie Peyrard, Régis Sabbadin, Ronan Trépos, Richard Fuller, Bradley Woodworth (2023). FlywayNet : A hidden semi-Markov model for inferring the structure of migratory bird networks from count data. Methods in Ecology and Evolution.

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Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi (2023). Computing Phylo-k-mers. IEEE/ACM Transactions on Computational Biology and Bioinformatics.

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Pierre Neuvial, Sylvain Foissac, Nathalie Vialaneix (2023). Comprendre l'organisation spatiale de l'ADN à l'aide de la statistique. L’Interdisciplinarité.

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Marielle Brunette, Stéphane Couture, Kene Boun My (2023). Are decision-makers sensitive to the source of uncertainty ?.

Ellen Laclef, Amandine Lurette, Patrick Taillandier, Philippe Hassoun, Sara Parisot, Charlotte Allain, David Portes, Nathalie Debus, Eliel González García (2023). Alternative hormone-free reproduction management of a dairy sheep flock disrupts the farm's annual feeding system calendar and its associated strategies. Journal of Dairy Science.

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Valentine Barassé, Nathan Téné, Christophe Klopp, Françoise Paquet, Niklas Tysklind, Valérie Troispoux, Hadrien Lalägue, Jérôme Orivel, Benjamin Lefranc, Jérôme Leprince, Martin Kenne, Maurice Tindo, Michel Treilhou, Axel Touchard, Elsa Bonnafé (2022). Venomics survey of six myrmicine ants provides insights into the molecular and structural diversity of their peptide toxins. Insect Biochemistry and Molecular Biology.

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Chloé Cerutti, Sophie Leroux, Paul Terzian, Joanna Lledo, David Gourichon, Rémy-Félix Serre, Céline Vandecasteele, Christophe Klopp, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Frederique Pitel, Guillaume Devailly (2022). Transgenerational epigenetics in quail. Genotoul Biostat Bioinfo Day.

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Véronique Bellon Maurel, Ludovic Brossard, Frédérick Garcia, Nathalie Mitton, Alexandre Termier (2022). The french INRIA- INRAE White Book ``Agriculture and digital technologies'' - Coupling digitalization and agroecology to design more sustainable and resilient food systems. NARO 2022 - 2nd International Symposium on Food and Health ``Global Food Security and Human Health -Toward Transforming the Food System with Advanced Technology-’'.

Matthias ZYTNICKI, Christine Gaspin (2022). srnaMapper: an optimal mapping tool for sRNA-Seq reads. BMC Bioinformatics.

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Laclef Elen, Nathalie Debus, Patrick Taillandier, Philippe Hassoun, Sara Parisot, Eliel González García, Amandine Lurette (2022). Simulation de l'impact de la pratique de l'insémination sans hormones sur les performances et l'alimentation d'un troupeau ovin laitier. Rencontres autour des Recherches sur les Ruminants.

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Adrien Vidal, Franck Gauthier, Willy Rodrigez, Nadège Guiglielmoni, Damien Leroux, Nicolas Chevrolier, Sylvain Jasson, Elise Tourrette, Olivier C Martin, Matthieu Falque (2022). SeSAM: software for automatic construction of order-robust linkage maps. BMC Bioinformatics.

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Ophélie Léger, Frédérick Garcia, Mehdi Khafif, Sébastien Carrere, Nathalie Leblanc-Fournier, Aroune Duclos, Vincent Tournat, Eric Badel, Marie Didelon, Aurélie Le Ru, Sylvain Raffaele, Adelin Barbacci (2022). Pathogen-derived mechanical cues potentiate the spatio-temporal implementation of plant defense. BMC Biology.

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Joanna Fourquet, Maïna Vienne, Jean Mainguy, Vincent Darbot, Pierre Martin, Olivier Bouchez, Adrien Castinel, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Céline Noirot, Géraldine Pascal, Claire Hoede (2022). metagWGS : a workflow to analyse short or long HiFi metagenomic reads. Bioinfo Biosta Genotoul day.

Léa Grima, Celine Brouard, Simon De Givry, Anne Goelzer, Élise Maigné, Nathalie Vialaneix (2022). Leçons apprises de l' évaluation des méthodes d'inférence de réseau de gènes chez Bacillus subtilis. Journée Régionale Bioinfo/Biostat.

Anthony Bertucci, Claire Hoede, Emilie Dassié, Pierre-Yves Gourves, Amandine Suin, Karine Le Menach, Hélène Budzinski, Françoise Daverat (2022). Impact of environmental micropollutants and diet composition on the gut microbiota of wild european eels (Anguilla anguilla). Environmental Pollution.

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Élise Maigné, Céline Noirot, Jérôme J. Mariette, Yaa Adu Kesewaah, Sébastien Dejean, Camille Guilmineau, Julien Henry, Arielle Krebs, Laurence Liaubet, Fanny Mathevet, Entreprise Hyphen-Stat, Christine Gaspin, Nathalie Vialaneix (2022). ASTERICS: A Tool for the ExploRation and Integration of omiCS data. Journée Régional Bioinfo/Biostat.

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Adrien Castinel, Jean Mainguy, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Claire Hoede, Géraldine Pascal, Olivier Bouchez (2022). The benefits of long read HiFi sequencing for metagenomic analysis. France génomique - VIIème Animation Wetlab et Bioinfo.

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Paul Jourdan (2022). Représentation et algorithmique des jeux à information incomplète. Application à la conservation de la biodiversité.

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Nathalie Vialaneix (2022). Multi-omics data integration methods: kernel and other machine learning approaches. Machine Learning for Life Sciences.

Chi Quang Truong, Alexis Drogoul, Benoit Gaudou, Patrick Taillandier, Nghi Huynh Quang, Arthur Brugière, Ha Thi Thu Nguyen, Philip Minderhoud, Etienne Espagne (2022). LUCAS-GEMMES : Integrated dynamics of adaptation strategies in the Vietnamese Mekong Delta. The Mekong Delta Emergency, Climate and Environmental Adaptation Strategies to 2050 - Final Report GEMMES Viet Nam project.

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Céline Bougel, Rémi Servien, Nathalie Vialaneix, Cécile Canlet, Laurent Debrauwer, Ilja Demuth, Kristina Norman, Valentin Vetter, Dominique Dardevet, Sergio Polakof (2022). Identification par une approche de métabolomique des voies métaboliques associées à la fragilité dans une cohorte de personnes âgées. Journées Francophones de la Nutrition.

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Cécile Héliès-Toussaint, Jacques Dupuy, Edwin Fouché, Charline Buisson, Françoise Guéraud, Fabrice H.F. Pierre, Cécile Noirot, Martin Pierre (2022). Combinaison de deux lignées épithéliales coliques murines isogéniques normales et délétées pour Nrf2 afin d'explorer le rôle du stress oxydant dans la toxicité de contaminants alimentaires.. Journées françaises de nutrition.

Olivier Berné, Lydiane Agier, Antoine Hardy, Emmanuel Lellouch, Olivier Aumont, Jérôme J. Mariette, Tamara Ben-Ari (2022). The carbon footprint of scientific visibility. Environmental Research Letters.

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Matthias ZYTNICKI (2022). srnamapper. version.

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Marie-Josée Cros, Jean-Marc Frigerio, Nathalie Peyrard, Alain Franc (2022). Simple approaches for evaluation of OTU quality based on dissimilarity arrays.

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Adrien Vidal, Franck Gauthier, Willy Rodrigez, Nadège Guiglielmoni, Damien Leroux, Nicolas Chevrollier, Sylvain Jasson, Elise Tourrette, Olivier C. Martin, Matthieu Falque (2022). SeSAM: software for automatic construction of order-robust linkage maps.

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Imke Mayer, Aude Sportisse, Julie Josse, Nicholas Tierney, Nathalie Vialaneix (2022). R-miss-tastic: a unified platform for missing values methods and workflows. The R Journal.

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Imke Mayer, Aude Sportisse, Nicholas Tierney, Nathalie Vialaneix, Julie Josse (2022). R-miss-tastic: a unified platform for missing values methods and workflows. The R Journal.

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Sam Nicol, Marie-Josée Cros, Nathalie Peyrard, Régis Sabbadin, Ronan Trépos, Richard A Fuller, Bradley K Woodworth (2022). FlywayNet: A hidden semi-Markov model for inferring the structure of migratory bird networks from count data.

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Rocío Joo, Nathalie Vialaneix, Roger Bivand, Dirk Eddelbuettel, David Meyer, Mathieu Basille, Matthew E. Boone, Achim Zeilis (2022). CRAN Task Views para Guiar a usuaries de paquetes de R. LatinR.

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Patrice Loisel, Marielle Brunette, Stéphane Couture (2022). Ambiguity, value of information and forest rotation decision under storm risk.

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Johan Quilbé, Nico Nouwen, Marjorie Pervent, Rémi Guyonnet, Julie Cullimore, Frédéric Gressent, Natasha Horta Araújo, Djamel Gully, Christophe Klopp, Eric Giraud, Jean-François Arrighi (2022). A mutant-based analysis of the establishment of Nod-independent symbiosis in the legume Aeschynomene evenia. Plant Physiology.

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Chloé Cerutti, Sophie Leroux, Paul Terzian, Joanna Lledo, David Gourichon, Rémy-Félix Serre, Céline Vandecasteele, Christophe C. Klopp, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Frederique Pitel, Guillaume Devailly (2022). Transgenerational epigenetics in quail. ECCB2022 - 21st European Conference on Computational Biology.

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Jean Mainguy, Adrien Castinel, Olivier Bouchez, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Claire Hoede, Géraldine Pascal (2022). Strengths and limits of long read metabarcoding. ECCB 2022.

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Marianne Defresne, Delphine Dessaux, Thomas Schiex, Sophie Barbe (2022). Protein Design with Automated Reasoning and Deep Learning. Symposium on Systems and Synthetic Biology (BioSynSys2022).

Joanna Fourquet, Maïna Vienne, Jean Mainguy, Vincent Darbot, Pierre Martin, Olivier Bouchez, Adrien Castinel, Sylvie Combes, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Céline Noirot, Géraldine Pascal, Claire Hoede (2022). metagWGS: a workflow to analyse short and long HiFi metagenomic reads. ECCB2022.

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Julien Chiquet, Marie-Josée Cros, Mahendra Mariadassou, Nathalie Peyrard, Stéphane Robin (2022). Le modèle Poisson log-normal pour l'analyse de distributions jointes d'abondance. Approches statistiques pour les variables cachées en écologie.

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Ellen Laclef, Nathalie Debus, P. Taillandier, Philippe Hassoun, Sara Parisot, Eliel González García, Amandine Lurette (2022). Introducing hormone-free insemination in dairy sheep farms challenges their feeding system design. 73rd Annual Meeting of the European Federation of Animal Science.

Alain Vignal, Sonia E Eynard, Christophe C. Klopp, Bertrand Servin, Kamila Canale-Tabet, Emmanuelle Labarthe, William Marande, Céline Vandecasteele, Céline Roques, Cécile Donnadieu (2022). In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates. 9th European Congress of Apidology.

Steffen Fuchs, Loélia Babin, Elissa Andraos, Chloé Bessiere, Semjon Willier, Johannes Schulte, Christine Gaspin, Fabienne Meggetto (2022). Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing. PLoS ONE.

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Lise Pomiès, Celine Brouard, Harold Duruflé, Élise Maigné, Clément CARRE, Louise Gody, Fulya Trösser, George Katsirelos, Brigitte Mangin, Nicolas Langlade, Simon De Givry (2022). Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals. Bioinformatics.

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Kamila Canale-Tabet, Emmanuelle Labarthe, Alain Vignal, Nathalie Escaravage, Géraldine Pascal, Christophe C. Klopp, André Pornon, Rémi Rudelle, Annie Ouin, Mélodie Ollivier, Magalie Pichon (2022). CONSTRUCTION OF A 16S MINI BARCODE LIBRARY FOR FRENCH WILD BEES. 9th European Congress of Apidology.

G. Ávila, Muriel Bonnet, A. Delavaud, D. Viala, S. Déjean, C. Lecchi, F. Ceciliani (2022). Citrus pectin modulates chicken peripheral blood mononuclear cells proteome. 73rd Annual Meeting of European Federation of Animal Science (EAAP).

Élise Maigné, Céline Noirot, Jérôme J. Mariette, Yaa Adu Kesewaah, Sébastien Dejean, Camille Guilmineau, Julien Henry, Arielle Krebs, Laurence Liaubet, Fanny Mathevet, Christine Gaspin, Nathalie Vialaneix (2022). ASTERICS: A Tool for the ExploRation and Integration of omiCS data. ECCB: 21st European Conference on Computational Biology.

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Jérôme MARIETTE, Odile Blanchard, Olivier Berné, Olivier Aumont, Julian Carrey, Anne-Laure Ligozat, Emmanuel Lellouch, Philippe-Emmanuel P.-E. Roche, Gaël Guennebaud, Joel Thanwerdas, Philippe Bardou, Gérald Salin, Élise Maigné, Sophie Servan, Tamara Ben-Ari (2022). An open-source tool to assess the carbon footprint of research. Environmental Research: Infrastructure and Sustainability.

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Charles-Elie Rabier, Céline Delmas (2022). The SgenoLasso for gene mapping and genomic prediction. 24th International Conference on Computational Statistics.

Pascale Plaisancié, Charline Buisson, Edwin Fouché, Pierre Martin, Céline Noirot, Claire Maslo, Jacques Dupuy, Françoise Guéraud, Fabrice H.F. Pierre (2022). Study of the colonic epithelial-mesenchymal dialogue through establishment of two activated or not mesenchymal cell lines: Activated and resting ones differentially modulate colonocytes in co-culture. PLoS ONE.

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Jacques-Eric Bergez, Stéphane Couture, Magali Willaume, Johanna Alkan-Olsson, Marine Albert (2022). Development of an assessment method for vulnerability to climate change of maize farming systems. 17th Congress of the European Society for Agronomy: Diversification and Digitalisation (ESA 2022).

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Charles-Elie Rabier, Céline Delmas (2022). New Statistical Methods For Association Studies And Genomic Prediction. 4th International Conference on Statistics: Theory and Applications (ICSTA'22).

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Luc Brogat-Motte, Rémi Flamary, Celine Brouard, Juho Rousu, Florence d'Alché-Buc (2022). Learning to Predict Graphs with Fused Gromov-Wasserstein Barycenters. ICML 2022 - 39th International Conference on Machine Learning.

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