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A comprehensive review and benchmark of differential analysis tools for Hi-C data

Élise Jorge, Sylvain Foissac, Pierre Neuvial, Matthias ZYTNICKI, Nathalie Vialaneix

Hi-C data 3D genomics statistical testing benchmark

A Strategy for Balanced Haplotype-Resolved De Novo Assembly of the Autotetraploid Genome of Medicago sativa

Adela Poublan-Couzardot, Bernadette Julier, Marie Pégard, Simon de Givry, Christine Gaspin, Fabrice Legeai, Frédéric Choulet, Christophe Klopp

Genome scaffolding Genome assembly

Cross-Species Predictions of Chromatin Annotations using Neural Networks

Noémien Maillard, Christophe Klopp, Donnadieu Cécile, Julie Demars, Raphaël Mourad

Cross-species artificial intelligence deep learning

SnoBoard: surfing on ncRNA modifications and snoRNA guides

Philippe Bordron, Julien Touchais, Christine Gaspin

NcRNA SnoRNA RNA modification GraphQL Neo4j Knowledge Graph

The Genotoul-Bioinfo platform

Florent Blaise, Philippe Bordron, Patrice Dehais, Vincent Dominguez, Christine Gaspin, Fabien Graziani, Claire Hoede, Christophe Klopp, Didier Laborie, Céline Noirot, Philippe Ruiz, Adela Poublan-Couzardot, Martin Racoupeau, Marie-Stéphane Trotard, Nathalie Vialaneix, Matthias ZYTNICKI

Genetic and epigenetic selection signatures from pool sequencing experiment

Sonia E Eynard, Kossi-Julien Kowou, Cécile Donnadieu, Loïc Flatres-Grall, Carole Iampietro, Sandrine Lagarrigue, Sophie Leroux, Joanna Lledo, Marie-José Mercat, Juliette Riquet, Céline Vandecasteele, Frédérique Pitel, Bertrand Servin

The first risk assessment tool to predict the emergence of high pathogenicity H5/H7 Avian Influenza variants

Aldair Martin Martinez Pineda, Bertille Pouget, Claire Hoede, Christine Gaspin, Romain Volmer

Influenza A EVOLUTION HP ADAPTATION

Transgenerational epigenetics in quail: targeting DNA methylation patterns to address the interplay between genetic and epigenetic mechanisms

Stacy Rousse, Chloé Cerutti, Sophie Leroux, Paul Terzian, Joanna Lledo, David Gourichon, Rémy-Félix Serre, Céline Vandecasteele, Christophe Klopp, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Frédérique Pitel, Guillaume Devailly, Sonia E Eynard

Mechanisms and impact of ribosomal RNA methylation in plants

Sara Alina Neumann, Jacinthe Azevedo-Favory, Rémy Merret, Marie-Christine Carpentier, Julien Henry, V. Marchand, Anne Debures, Magali Rompais, Christine Carapito, Yuri Motorin, Julio Sáez-Vásquez

ribosomal RNA Ribosome methylation Ribosomes

AI-powered de novo design of miniprotein binders

Younes Bouchiba, Juan Cortés, Thomas Schiex, Sophie Barbe