Dernières publications

L’ensemble des publications du laboratoire peuvent être obtenues sur https://hal.inrae.fr/MIAT/.

Frédérick Garcia, Aurelie Javelle (2024). Du soin à l'assujettissement : utilisation d'un dispositif sonore en productions végétales. New perspectives in plant ethics.

Article de conférence

Benoîte de Saporta, Alice Cleynen, Orlane Rossini, Régis Sabbadin, Amélie Vernay, Aymar Thierry d'Argenlieu (2024). Stochastic control for medical treatment optimization. Journées de lancement de la fédération OcciMath.

Article de conférence

Jean-Marc Azaïs, Federico Dalmao, Céline Delmas (2024). Multivariate CLT for critical points.

Preprint

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Céline Brouard, Raphaël Mourad, Nathalie Vialaneix (2024). Should we really use graph neural networks for transcriptomic prediction?. Briefings in Bioinformatics.

Article de revue

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Tania Malonga, Christelle Knudsen, Emeline Lhuillier, Patrick Aymard, Elodie Riant, Cédric Cabau, Nathalie Vialaneix, Martin Beaumont (2024). La transcriptomique en cellule unique révèle les processus de maturation induits dans chaque type de cellule épithéliale intestinale lors de l'introduction de l'alimentation solide. CECED 2024.

Article de conférence

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Sarah A Naudin, Aude A Ferran, Pedro Henrique Imazaki, Nathalie Arpaillange, Camille Marcuzzo, Maïna Vienne, Sofia Demmou, Alain Bousquet-Mélou, Felipe Ramon-Portugal, Marlene Z Lacroix, Claire Hoede, Maialen Barret, Véronique Dupouy, Delphine Bibbal (2024). Development of an in vitro biofilm model for the study of the impact of fluoroquinolones on sewer biofilm microbiota. Frontiers in Microbiology.

Article de revue

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Cleynen Alice, Benoîte de Saporta, Orlane Rossini, Régis Sabbadin (2024). Contrôle dynamique stochastique : une approche à base demodèles semi-Markov. 10èmes Rencontres des Jeunes Statistien.ne.s.

Article de conférence

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Patrick Taillandier, Kevin Chapuis, Benoit Gaudou, Arthur Brugière, Alexis Drogoul (2024). COMOKIT v2: A multi-scale approach to modeling and simulating epidemic control policies. PLoS ONE.

Article de revue

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S. S. Prasanna Maddila, Régis Sabbadin, Meritxell Vinyals (2024). Anti-Poaching as a Partially Observable Stochastic Game. 25ème édition du congrès annuel de la Société Française de Recherche Opérationnelle et d’Aide à la Décision ROADEF 2024.

Article de conférence

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Pierre Neuvial, Nathanael Randriamihamison, Marie Chavent, Sylvain Foissac, Nathalie Vialaneix (2024). A two-sample tree-based test for hierarchically organized genomic signals. Journal of the Royal Statistical Society: Series C Applied Statistics.

Article de revue

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Sonia Eynard, Christophe Klopp, Kamila Canale-Tabet, William Marande, Céline Vandecasteele, Céline Roques, Cécile Donnadieu, Quentin Boone, Bertrand Servin, Alain Vignal (2024). The black honey bee genome: insights on specific structural elements and a first step towards pan-genomes.

Preprint

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Noémien Maillard, Juliette Riquet, Katia Feve, Julie Demars, Raphaël Mourad (2024). Cross-species use of neural networks to improve pig genome annotation -a proof of concept. Environmental and Agronomical Genomics.

Poster

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Nina Marthe (2024). Transfert d'annotation dans des graphes de pangénome. Journées 2024 du PEPR Agroécologie et Numérique.

Poster

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Didier Aurelle, Anne Haguenauer, Chloé Blaise, Lauric Reynes, Sophie Arnaud-Haond, Joana Boavida, Cédric Cabau, Christophe Klopp, Tomas Lundalv, Camille Noûs, Stéphane Sartoretto, Claudia Wienberg, Carlos Jiménez, Covadonga Orejas (2024). On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios. Zoologica Scripta.

Article de revue

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Benoîte de Saporta, Aymar Thierry d'Argenlieu, Régis Sabbadin, Alice Cleynen (2024). Medical follow-up optimization: A Monte-Carlo planning strategy.

Preprint

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Tamara Ben-Ari, Gaelle Lefort, Jérôme Mariette, Olivier Aumont, Laurent Jeanneau, Alexandre Santerne, Aymeric Spiga, Philippe-E Roche (2024). Flight quotas outperform focused mitigation strategies in reducing the carbon footprint of academic travel. Environmental Research Letters.

Article de revue

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Mohamed Anwar Abouabdallah, Olivier Coulaud, Nathalie Peyrard, Alain Franc (2024). Computing WSBM marginals with Tensor-Train decomposition.

Preprint

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Slim Ben-Jemaa, Gabriele Adam, Mekki Boussaha, Philippe Bardou, Christophe C. Klopp, Nathalie Mandonnet, Michel Naves (2023). Whole genome sequencing reveals signals of adaptive admixture in Creole cattle. Scientific Reports.

Article de revue

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Nathalie Rousse, Simon de Givry (2023). Requêtes d'optimisation déportées : utilisation du solveur toulbar2 par services web.

Rapport

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Fabio Lilliu, Diego Reforgiato Recupero, Meritxell Vinyals, Roman Denysiuk (2023). Incentive mechanisms for the secure integration of renewable energy in local communities: A game-theoretic approach. Sustainable Energy, Grids and Networks.

Article de revue

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Simon Labarthe, Sandra Plancade, Sébastien Raguideau, Florian Plaza Oñate, Emmanuelle Le Chatelier, Marion Leclerc, Béatrice Laroche (2023). Four functional profiles for fibre and mucin metabolism in the human gut microbiome. Microbiome.

Article de revue

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Nina Marthe (2023). Annotation transfer in pangenome graphs. XI JORNADES DE BIOINFORMÀTICA I GENÒMICA.

Poster

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Siegfried Dubois, Benjamin Linard, Matthias ZYTNICKI, Claire Lemaitre, Thomas Faraut (2023). Towards an edit distance between pangenome graphs. SeqBIM 2023 - Journées sur les Séquences en Bioinformatique, Informatique et Mathématiques.

Article de conférence

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Alice Cleynen, Benoîte de Saporta, Orlane Rossini, Régis Sabbadin (2023). Contrôle dynamique stochastique : une approche à base de modèles semi-Markov Application à l'optimisation d'un traitement médical. 8èmes rencontres de statistique.

Article de conférence

Marianne de Paepe, Laurent Jeanneau, Jérôme J. Mariette, Olivier Aumont, André Estevez-Torres (2023). Purchases dominate the carbon footprint of research laboratories.

Preprint

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Cyril Kurylo, Matthias ZYTNICKI, Sylvain Foissac, Élise Maigné (2023). HiCDOC : A/B compartment detection and differential analysis. version 3.1.2.

Logiciel

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Tamara Ben-Ari, Gaelle Lefort, Jérôme J. Mariette, Olivier Aumont, Laurent Jeanneau, Alexandre Santerne, Aymeric Spiga, Philippe-Emmanuel Roche (2023). Flight Quotas Hold the Most Significant Potential for Reducing Carbon Emissions from Academic Travel.

Preprint

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Élise Maigné, Céline Noirot, Julien Henry, Yaa Adu Kesewaah, Ludovic Badin, Sébastien Déjean, Camille Guilmineau, Arielle Krebs, Fanny Mathevet, Audrey Segalini, Laurent Thomassin, David Colongo, Christine Gaspin, Laurence Liaubet, Nathalie Vialaneix (2023). ASTERICS: A Simple Tool for the ExploRation and Integration of omiCS data. BMC Bioinformatics.

Article de revue

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Matthias ZYTNICKI (2023). srnaMapper: an optimal mapping tool for sRNA-Seq reads. version.

Logiciel

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Sota Yagi, Aditya Padhi, Jelena Vucinic, Sophie Barbe, Thomas Schiex, Reiko Nakagawa, David SIMONCINI, Kam Zhang, Shunsuke Tagami (2023). Seven amino acid types suffice to reconstruct the core fold of RNA polymerase.

Preprint

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Geneviève Gésan-Guiziou, Aude Alaphilippe, Joël Aubin, Christian Bockstaller, Rachel Boutrou, Patrice Buche, Catherine C. Collet, Agnès Girard, Vincent Martinet, Jeanne-Marie Membré, Régis Sabbadin, Marie Thiollet-Scholtus, Hayo van Der Werf (2023). Evaluation MultiCritère des Systèmes Agricoles et Alimentaires (EMC-SAgA) Bilan des activités et Poursuites envisagées. Animations transversales INRAE sur l’évaluation multicritères.

Article de conférence

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Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi (2023). Computing Phylo-k-mers. IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Article de revue

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Chloé Cerutti, Sophie Leroux, Paul Terzian, Joanna Lledo, David Gourichon, Jean-Noël Hubert, Yann Labrune, Rémy-Félix Serre, Céline Vandecasteele, Christophe C. Klopp, Carole Iampietro, Christine Gaspin, Denis Milan, Cécile Donnadieu, Vincent Coustham, Frédérique Pitel, Guillaume Devailly (2023). Transgenerational epigenetics in quail: whole genome DNA methylation analysis. Epigenetic Inheritance: Impact for Biology and Society.

Poster

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Agnès Bonnet, Sarah Maman, Laure Gress, Amandine Suin, Sabrina Legoueix, Céline Bravo, Yvon Billon, Nathalie Vialaneix, Cécile M. D. Bonnefont, Laurence Liaubet (2023). Transcriptome of the feto-maternal interface in pigs in late gestation: part2 - sow endometrium. Joint International Congress on Animal Science (EEAP 2023).

Poster

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Agnès Bonnet, Sarah Maman, Laure Gress, Amandine Suin, Céline Bravo, Gwendaëlle Cardenas, Yvon Billon, Laurianne Canario, Nathalie Vialaneix, Cécile M. D. Bonnefont, Laurence Liaubet (2023). Transcriptome of the feto-maternal interface in pigs in late gestation: part1fetal placenta. Joint International Congress on Animal Science (EEAP 2023).

Poster

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning *. Thirty-Second International Joint Conference on Artificial Intelligence (IJCAI-23).

Article de conférence

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning. Thirty-Second International Joint Conference on Artificial Intelligence (IJCAI-23).

Poster

Laurence Liaubet, Nathalie Marty-Gasset, Pauline Brenaut, Laure Gress, Agnès Bonnet, Élise Maigné (2023). Molecular phenotyping to predict neonatal maturity. EAAP.

Poster

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Alyssa Imbert, Nassim Duprat, Nathalie Marty-Gasset, Laure Gress, Cécile Canlet, Yvon Billon, Nathalie Vialaneix, Cécile M. D. Bonnefont, Agnès Bonnet, Laurence Liaubet (2023). 1H-NMR metabolomic study of Large White and Meishan pigs in late gestation: part 2 - sow endometrium. Joint International Congress on Animal Science (EEAP 2023).

Poster

Patrice Boizumault, Simon de Givry, Samir Loudni, Abdelkader Ouali (2023). Variable Neighborhood Search for Cost Function Networks. Handbook of Formal Optimization.

Chapitre de livre

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Cleynen Alice, Benoîte de Saporta, Orlane Rossini, Régis Sabbadin (2023). Un exemple d'optimisation de traitement médical avec modèle incertain. 54es Journée de la Statistique de la SFdS.

Article de conférence

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Mekki Boussaha, Camille Eché, Clémentine Escouflaire, Cécile Grohs, Carole Iampietro, Aurélien Capitan, Denis Milan, Christine Gaspin, Sébastien Fritz, Cécile Donnadieu, Didier Boichard (2023). Search for new mutations in cattle by systemac whole genome resequencing. 39th International Society of Animal Genetics Conference.

Poster

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Marianne Defresne, Thomas Schiex, Sophie Barbe (2023). Scalable Coupling of Deep Learning with Logical Reasoning. PFIA'23.

Article de conférence

Hanna Bacave, Pierre-Olivier Cheptou, Nikolaos Limnios, Nathalie Peyrard (2023). Non parametric observation driven HMM. 54 ièmes journées de Statistique de la SFdS.

Article de conférence

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Ellen Laclef, Nathalie Debus, Patrick Taillandier, Eliel González García, Amandine Lurette (2023). Modelling the long-term consequences of implementing hormone-free reproductive management on the sustainability of a dairy sheep farm. Computers and Electronics in Agriculture.

Article de revue

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Camille Guilmineau, Marie Tremblay-Franco, Nathalie Vialaneix, Rémi Servien (2023). Modélisation de données métabolomiques longitudinales par voies métaboliques. Journées de statistique de la SFdS.

Article de conférence

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Thibault Destanque, Tony Rochegüe, Joanna Fourquet, Marisa Haenni, Jean-Yves Madec, Claire Hoede, Agnese Lupo (2023). Impact of amoxicillin therapy on pre-weaned calves intestinal microbiota and its resistome. 10th FEMS Congress of European Microbiologists.

Poster

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Jacqueline Smith, James Alfieri, Nick Anthony, Peter Arensburger, Giridhar Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel Borodin, Rachel Carroll, Meya Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack Dekkers, Martijn Derks, Abigail Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven Fiddaman, Giulio Formenti, Laurent A.F. Frantz, Janet Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P. Godinez, Ashton Goodell, Jennifer A.M. Graves, Darren Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan Lamont, Margaret Lange, Anika Lanke, Denis Larkin, Greger Larson, John King N. Layos, Ophélie Lebrasseur, Lyubov Malinovskaya, Rebecca Martin, Maria Luisa Martin Cerezo, Andrew Mason, Fiona Mccarthy, Michael Mcgrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng'ang'a, Masahide Nishibori, Rebecca O'connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip Patel, Francesco Perini, María Ines Pigozzi, Krista Potter, Peter Price, Christian Reimer, Edward Rice, Nicolas Rocos, Thea Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna Torgasheva, Alan Tracey, Clive Tregaskes, Lonneke Vervelde, Ying Wang, Wesley Warren, Paul Waters, David Webb, Steffen Weigend, Anna Wolc, Alison Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou (2023). Fourth report on chicken genes and chromosomes 2022. Cytogenetic and Genome Research.

Article de revue

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Aurélie Mercadie, Eleonore Gravier, Gwendal Josse, Nathalie Vialaneix, Céline Brouard (2023). Extension de la NMF supervisée pour l'intégration de données omiques. Journée de Statistique de la SFdS.

Article de conférence

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Olivier Gillet, Éric Daudé, Arnaud Saval, Clément Caron, Sébastien Rey-Coyrehourcq, Patrick Taillandier, Pierrick Tranouez (2023). ESCAPE - Simulation à base d'agents pour l'évacuation de populations lors des situations d'urgence. JFSMA- - Journées Francophones sur les Systèmes Multi-Agents.

Article de conférence

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Stéphane Couture, Stéphane Lemarié, Sabrina Teyssier, Pascal Toquebeuf (2023). The value of information under ambiguity: a theoretical and experimental study on pest management in agriculture. Theory and Decision.

Article de revue

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Matthias ZYTNICKI, Hoang-Giang Pham (2023). sRNA-pipe A Nextflow-based pipeline for small RNA analysis. JOBIM.

Poster

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Élise Maigné, Isabelle Sanchez, David Carayon, Joseph Tran, Jean-François Rey (2023). SK8 : Un service institutionnel de gestion et d'hébergement d'applications Shiny. Rencontres R 2023.

Poster

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Hanna Bacave, Pierre-Olivier Cheptou, Nikolaos Limnios, Nathalie Peyrard (2023). Non-parametric Observation Driven HMM.

Preprint

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Nicolas Homberg (2023). New models and algorithms for the identification of sncRNA-(snc)RNAinteractions intra and across-species/kingdoms.

Thèse

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Laurence Liaubet, Gaelle Lefort, Yvon Billon, Sébastien Reigner, Jean Bailly, Camille Guilmineau, Nathalie Marty-Gasset, Laure Gress, Rémi Servien, Agnès Bonnet, Hélène Gilbert, Nathalie Vialaneix, Hélène Quesnel (2023). Neonatal metabolic profiling shows relationships between metabolites and biometric phenotypes related to piglet maturity at birth. 11th International Conference on Pig Reproduction (ICPR).

Poster

Alexis Hardy, Mélody Matelot, Amandine Touzeau, Christophe C. Klopp, Céline Lopez-Roques, Sandra Duharcourt, Matthieu Defrance (2023). DNAModAnnot: a R toolbox for DNA modification filtering and annotation. Bioinformatics.

Article de revue

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Alexis Mergez, Raphaël Mourad, Matthias ZYTNICKI (2023). DLScaff : Deep Learning and Hi-C data for chimeric contigs detection. JOBIM ( JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES ) 2023.

Poster

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Siegfried Dubois, Claire Lemaitre, Thomas Faraut, Matthias ZYTNICKI (2023). Comparaison et visualisation de graphes de pangénomes.

Rapport

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Alyssa Imbert, Nathalie Marty-Gasset, Laure Gress, Cecile Bonnefont, Nathalie Vialaneix, Laurence Liaubet, Agnès Bonnet (2023). Characterization of the endometrial metabolome in late gestation. International Conference on Pig Reproduction 2023.

Poster

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Damien Saveant, Mathieu Guimont, Patrick Taillandier, Nicolas Darcel (2023). Can in-silico approaches of human eating behaviours shed light on the key factors driving meal decisions?. Benjamin Franklin & Lafayette Seminar.

Article de conférence

Hajar Bouhamout, Benjamin Linard, Matthias ZYTNICKI (2023). Benchmarking read mapping on pangenomic variation graphs. jobim 2023.

Poster

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Alice Cleynen, Benoîte de Saporta, Orlane Rossini, Régis Sabbadin (2023). An example of medical treatment optimization under model uncertainty. Processus markoviens, semi-markoviens et leurs applications.

Article de conférence

Alice Cleynen, Benoîte de Saporta, Orlane Rossini, Régis Sabbadin (2023). An example of medical treatment optimization under model uncertainty. Applied Probability Society Conference.

Article de conférence

Patrice Loisel, Marielle Brunette, Stéphane Couture (2023). Ambiguity, value of information and forest rotation decision under storm risk. WCNRM.

Article de conférence

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Sandra Plancade, Elodie Marchadier, Sylvie Huet, Adrienne Ressayre, Camille Noûs, Christine Dillmann (2023). A successive time-to-event model of phyllochron dynamics for hypothesis testing: application to the analysis of genetic and environmental effects in maize. Plant Methods.

Article de revue

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Pierre Montalbano, David Allouche, Simon de Givry, George Katsirelos, Tomáš Werner (2023). Virtual Pairwise Consistency in Cost Function Networks. 20th International Conference on the Integration of Constraint Programming, Artificial Intelligence, and Operations Research.

Article de conférence

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Charles-Elie Rabier, Céline Delmas (2023). The SgenoLasso, a new Lasso method dedicated to extreme observations in genomics. International Conference on Robust Statistics.

Article de conférence

Tomáš Dlask, Tomáš Werner, Simon de Givry (2023). Super-reparametrizations of weighted CSPs: properties and optimization perspective. Constraints.

Article de revue

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Raphaël Mourad (2023). Semi-supervised learning improves regulatory sequence prediction with unlabeled sequences. BMC Bioinformatics.

Article de revue

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Camille Eché, Carole Iampietro, Clement Birbes, Andreea Dreau, Claire Kuchly, Arnaud Di Franco, Christophe C. Klopp, Thomas Faraut, Sarah Djebali, Adrien Castinel, Matthias ZYTNICKI, Erwan Denis, Mekki Boussaha, Cécile Grohs, Didier Boichard, Christine Gaspin, Denis Milan, Cécile Donnadieu (2023). Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies. Discoveries Roadshow 2023 - PacBio.

Article de conférence

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Marianne Defresne, Thomas Schiex, Sophie Barbe (2023). Computational Protein Design with Artificial Intelligence. GGMM 2023.

Article de conférence

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Hilaire Drouineau, J Domange, Laurent Beaulaton, Patrick Lambert, Stéphanie Mahévas, Victor Picheny, Robert Faivre (2023). Calibration of a complex population dynamics model: from its development to results validation. Workshop on calibration of numerical code.

Article de conférence

Olivier Aumont, Tamara Ben-Ari, Jérôme Mariette, Laurent Jeanneau, Aymeric Spiga, Gaelle Lefort, Philippe-E. Roche, Alexandre Santerne, André Estevez-Torres (2023). Traveling for academic research : patterns, determinants and mitigation options. EGU General Assembly 2023.

Article de conférence

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Charles-Elie Rabier, Céline Delmas (2023). The AdaptSgenoLasso, an extended version of the SgenoLasso, for gene mapping and for genomic prediction using the extremes.

Preprint

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Meritxell Vinyals, Régis Sabbadin, Stéphane Couture, Loïc Sadou, Rallou Thomopoulos, Kevin Chapuis, Baptiste Lesquoy, Patrick Taillandier (2023). Toward AI-designed innovation diffusion policies using agent-based simulations and reinforcement learning: The case of digital tool adoption in agriculture. Frontiers in Applied Mathematics and Statistics.

Article de revue

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Nicolas Homberg, Mariana Galvão Ferrarini, Christine Gaspin, Marie-France Sagot (2023). MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring. Genes.

Article de revue

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Arnaud Saval, Duc Pham Minh, Kevin Chapuis, Pierrick Tranouez, Clément Caron, Éric Daudé, Patrick Taillandier (2023). Dealing with mixed and non-normative traffic. An agent-based simulation with the GAMA platform. PLoS ONE.

Article de revue

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Quang Chi Truong, Alexis Drogoul, Benoit Gaudou, Patrick Taillandier, Nghi Quang Huynh, Thao Hong Nguyen, Philip Minderhoud, Ha Nguyen Thi Thu, Etienne Espagne (2023). An Agent-Based Model for Land-Use Change Adaptation Strategies in the Context of Climate Change and Land Subsidence in the Mekong Delta. Sustainability.

Article de revue

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Simon de Givry (2023). toulbar2, an exact cost function network solver. 24ème édition du congrès annuel de la Société Française de Recherche Opérationnelle et d’Aide à la Décision ROADEF 2023.

Article de conférence

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Marianne Defresne, Thomas Schiex, Sophie Barbe (2023). Learning to Reason: Predict-then-Optimize vs Predict-and-Optimize. AAAI 2023 Bridge on Constraint Programming and Machine Learning.

Article de conférence

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Marielle Brunette, Stéphane Couture (2023). Forest Insurance for Natural Events: An Overview by Economists. Forests.

Article de revue

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Samuel Buchet, Marianne Defresne, Simon de Givry, Manon Ruffini, Thomas Schiex (2023). Bilevel optimization and its bicriteria approximation in computational protein design. Société Française de Recherche Opérationnelle et d’Aide à la Décision ROADEF 2023.

Article de conférence

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Axel Poulet, Ellyn Rousselot, Stéphane Téletchéa, Céline Noirot, Yannick Jacob, Josien van Wolfswinkel, Christophe Thiriet, Céline Duc (2023). The Histone Chaperone Network Is Highly Conserved in Physarum polycephalum. International Journal of Molecular Sciences.

Article de revue

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Tomáš Dlask, Tomáš Werner, Simon de Givry (2023). Super-Reparametrizations of Weighted CSPs: Properties and Optimization Perspective. Constraints, an International Journal.

Article de revue

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning. International Joint Conferences on Artificial Intelligence Organization.

Non catégorisé

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Marianne Defresne, Sophie Barbe, Thomas Schiex (2023). Scalable Coupling of Deep Learning with Logical Reasoning. arXiv.

Non catégorisé

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Laurence Liaubet, Camille Guilmineau, Gaelle Lefort, Yvon Billon, Sébastien Reigner, Jean Bailly, Nathalie Marty-Gasset, Laure Gress, Rémi Servien, Agnès Bonnet, Hélène Gilbert, Nathalie Vialaneix, Hélène Quesnel (2023). Plasma 1H-NMR metabolic and amino acid profiles of newborn piglets from two lines divergently selected for residual feed intake. Scientific Reports.

Article de revue

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Olivier Gillet, Éric Daudé, Arnaud Saval, Clément Caron, Patrick Taillandier, Pierrick Tranouez, Sébastien Rey-Coyrehourcq, Jean-Christophe Komorowski (2023). Modeling staged and simultaneous evacuation during a volcanic crisis of La Soufrière of Guadeloupe (France). SIMULATION: Transactions of The Society for Modeling and Simulation International.

Article de revue

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Franck Taillandier, Benoit Gaudou, Frédéric Amblard, Patrick Taillandier (2023). La modélisation Agent pour le Génie Civil. Academic Journal of Civil Engineering.

Article de revue

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Audrey Barranger, Christophe Klopp, Barbara Le Bot, Gaëlle Saramito, Lise Dupont, Stéphanie Llopis, Claudia Wiegand, Françoise Binet (2023). Insights into the molecular mechanisms of pesticide tolerance in the Aporrectodea caliginosa earthworm. Environmental Pollution.

Article de revue

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P. Debaeke, F. Attia, Luc Champolivier, Jean-François Dejoux, Arnaud Micheneau, A. Al Bitar, Ronan Trépos (2023). Forecasting sunflower grain yield using remote sensing data and statistical models. European Journal of Agronomy.

Article de revue

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Pierre Neuvial, Sylvain Foissac, Nathalie Vialaneix (2023). Comprendre l'organisation spatiale de l'ADN à l'aide de la statistique. L’Interdisciplinarité.

Chapitre de livre

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Samuel Buis, Guillaume Jégo, Eric Casellas (2023). Chapter 16. Model capacity extension methods. Stics Soil Crop Model. Conceptual framework, equations and uses.

Chapitre de livre

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